Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca11g02938 | ATGAAACTTGACCCCAAAATCAATGAAATGGAGGTCAAGATGCATGGCATTGGTACGCCTCGTCAAACACCAGAAACAGCTAATAAAACAACAGATGTGAATGTAATATCATACAAAGACAAAGGTCATATTCTCACCCGGGATCATCAGCGCCACTTCCAAAATGTACGGATTCTAATCCTCATAGGATGGGGCACTTTGCTACCCATCGGGGTAATCATTGCAAGATACTTGAGAAATTTTCCTGTTCTGTATGATGTATGGTTCAAGTGTCACCTAGTGTGCCAGACTTTGGGATATATTCTTGGCACAATGGGGTGGTGCATGTGGCTGGGGCTTGGAAACTCATCAAAACATTTTGTATCTAAAACACAAAGTATTCTCAGCATCATTGCTTTCACATTCATAAACGTACAAATGCTTGCCACCTTCATGCGACTAAATAAAGAAGCGGGGTATTGCAAGTGCTGGAACATATGTCACCATCTTCTTGGGTATGCCATAATTGGAATAGTTATAGCAAACATATCTGTAGGGTTCCACGATGAAACGTTGAGACGGGTTTATGAGGGAATACTTGGAGATGCTAGTGCGCCAGCTGCATTTCTTAGACTCATGTTTcactacaccaaaattagACAAACCCAACCTTGTTCTTGTCTCATTCAAGGTTTATATATAAAGTCTCACTTGTTTCATTTATTTTTCACGCAGGGATGTGATGCCTCAATTTTGTTGGACTCCAACTACCTAAATTACAGCTCCGAAATGGTCTCTTCAAGGAACTTTGGCATCAGAAAGCGGGAAATGATCAGCCACATAAAGTCGACATTGGAAGAAGAATGTCCAGGACAGGTGTCTTGTGCAGATATCATTGTATTGGCTGCTAAGGAATCAGTGTCGTTCTCTGGAGGACCCAATATTGAGATCCCACTAGGAAGAAAAGACTCCAGAACTTGTAGTTTCCAGGAGGCTGATGCTAAGCTTCCTTCACCAACGACAACGGTTGATGAATTTATATCCATCTTCGTGTCTAAAGGAATGAACATTGAAGAGTCAGTTTCCATTTTAGGTGCACACACACTAGGGGTTGGACACTGCTTGAACATAGTTGGTAGGTTGTATGATCCAAAGCTAGGGGACACGATGGATTTTGGGTATGAAGCATCACTAAAACTAGCATGCCCAACTGAGATTCCTCTCACAAACCTCACAATTGTGCCTAATGACATGACCCCCCTTATATTTGACAACCAGTATTACCGAGACATTATAATAGGGAGAAGCTTGTTTGGTATTGACTCCAGCATTTCTAGAGATCCGCGAACAGCACCCTTTGTCAAGGGGTTTGCTATGGATCAGAACTACTTCTTCAAGGCTTTCTCATCTGCATTTGTTAAGCTTTCTACTACCGATGTTCTCACCGATGTGCAGGGTGATGCCCGTAGGCAATGCAACCAGTTAAATTAA | 1470 | 0.417 | MKLDPKINEMEVKMHGIGTPRQTPETANKTTDVNVISYKDKGHILTRDHQRHFQNVRILILIGWGTLLPIGVIIARYLRNFPVLYDVWFKCHLVCQTLGYILGTMGWCMWLGLGNSSKHFVSKTQSILSIIAFTFINVQMLATFMRLNKEAGYCKCWNICHHLLGYAIIGIVIANISVGFHDETLRRVYEGILGDASAPAAFLRLMFHYTKIRQTQPCSCLIQGLYIKSHLFHLFFTQGCDASILLDSNYLNYSSEMVSSRNFGIRKREMISHIKSTLEEECPGQVSCADIIVLAAKESVSFSGGPNIEIPLGRKDSRTCSFQEADAKLPSPTTTVDEFISIFVSKGMNIEESVSILGAHTLGVGHCLNIVGRLYDPKLGDTMDFGYEASLKLACPTEIPLTNLTIVPNDMTPLIFDNQYYRDIIIGRSLFGIDSSISRDPRTAPFVKGFAMDQNYFFKAFSSAFVKLSTTDVLTDVQGDARRQCNQLN | 489 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca11g02938 | 489 | Gene3D | - | 33 | 208 | - | - | |
| Cca11g02938 | 489 | PRINTS | Plant peroxidase signature | 285 | 295 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca11g02938 | 489 | PRINTS | Plant peroxidase signature | 266 | 279 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca11g02938 | 489 | PRINTS | Plant peroxidase signature | 463 | 476 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca11g02938 | 489 | PRINTS | Plant peroxidase signature | 226 | 246 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca11g02938 | 489 | PRINTS | Plant peroxidase signature | 407 | 422 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca11g02938 | 489 | PRINTS | Plant peroxidase signature | 351 | 363 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca11g02938 | 489 | PRINTS | Plant peroxidase signature | 304 | 319 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca11g02938 | 489 | PANTHER | PEROXIDASE | 192 | 487 | - | - | |
| Cca11g02938 | 489 | ProSiteProfiles | Plant heme peroxidase family profile. | 232 | 489 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca11g02938 | 489 | SUPERFAMILY | Heme-dependent peroxidases | 189 | 489 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca11g02938 | 489 | CDD | secretory_peroxidase | 177 | 486 | IPR033905 | GO:0004601|GO:0042744 | |
| Cca11g02938 | 489 | Gene3D | Peroxidase, domain 2 | 330 | 468 | - | - | |
| Cca11g02938 | 489 | Gene3D | - | 231 | 486 | - | - | |
| Cca11g02938 | 489 | PANTHER | PEROXIDASE 25-RELATED | 192 | 487 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca11g02938 | 489 | Pfam | Peroxidase | 196 | 452 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca11g02938 | 489 | PRINTS | Haem peroxidase superfamily signature | 352 | 367 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca11g02938 | 489 | PRINTS | Haem peroxidase superfamily signature | 409 | 424 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca11g02938 | 489 | PRINTS | Haem peroxidase superfamily signature | 199 | 213 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Cca11g02938 | 489 | ProSiteProfiles | Cytochrome b561 domain profile. | 19 | 216 | IPR006593 | - | |
| Cca11g02938 | 489 | SMART | 561_7 | 58 | 180 | IPR006593 | - | |
| Cca11g02938 | 489 | CDD | Cyt_b561_FRRS1_like | 58 | 181 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca11g02938 | Cca-Chr11 | 56662633 | 56669197 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca11g02938 | 239 | 489 | Peroxidase | AT3G17070 | 50.781 | 1.55e-81 | 252 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca11g02938 | K00430 | - | gmx:100806951 | 463.381 |