Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02936 ATGGCTACGTTAACCCCACCCCTCTTGCTCTCATGCTTCATGCTACACCTTGCTTCAACCTTGGTCATTGCCCTTTCAACAGAGAAGCACCACATCACTCCCCAACCTAAGCATATTCCCAAGAGTCCTAGAAAACCATTCCTGAATGTGATAGACTCTTGCTGGCGGGCCAAACCCAATTGGGCCTCAAATCGCCAAGCCTTGGCTGATTGTGCTATAGGCTTTGGCAAAGATGCCACAGGAGGCAAATATGGTGCAATATACCATGTCACAGATCCCTCTGATGACCCTTTAAACCCAAAACCTGGCACACTTCGTTATGGTGCAATCCAAACTGACCCACTTTGGATCATTTTCGACAAAGACATGGTTATTAGGCTCGAGAATGATCTCATCGTGAATAGCTACAAGACCATTGATGGGAGAGGAGCAAATGTGGAAATATCAAATGGGCCTTGCATTACAATGCAAGGTGTTAGTCATGTTATTATACATGGCATTAGCATCCATGATTGTAAACCAGCCAAGGATGGCCCTGTGAGGAGTACTCCTAACCATGTTTTCCATCGTCAAGGCTCTGATGGAGATGCCATTAGCATATTCTCTTCCTCAAATATTTGGATTGATCATTGTTTCTTGGCTCGTGCCACCGATGGCCTAATTGATGTTATTCATTCCTCAACTGCCATTACCATCTCTAACAATTACTTTACTCAGCATGACAAAGTTATGTTGCTAGGACATAATGACGAATACACAGCAGATAAAATAATGAAAGTAACAATAGCATTCAACCAGTTTGCTAGTGGCCTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTGGTCAACAACAAATATGATCAGTGGAAAATGTATGCTATAGGTGGCAGTGCCAACCCAACCATTTTGAGTGAAGGGAATTTTTATGTAGCACCAAATGATCTAAACGCAAAACAGATTACCAAGAGGGAAGTGAAGGAAAACTGGAAGAGTTGGAAATGGAGGTCTTCCAAGGACTTATTCCTAAATGGTGCTTATTTTGTACCATCTGGCTTTGGTAGCTGTGCCCCAAATTATTCATCTACTCAATCTTTTACTGCTGCTCCAGCCTACATGGTGCCTGCATTAACTCACAATGCCGGTCCCATAAATTGTGTTTTTGGGATACCCTGTTAG 1188 0.4301 MATLTPPLLLSCFMLHLASTLVIALSTEKHHITPQPKHIPKSPRKPFLNVIDSCWRAKPNWASNRQALADCAIGFGKDATGGKYGAIYHVTDPSDDPLNPKPGTLRYGAIQTDPLWIIFDKDMVIRLENDLIVNSYKTIDGRGANVEISNGPCITMQGVSHVIIHGISIHDCKPAKDGPVRSTPNHVFHRQGSDGDAISIFSSSNIWIDHCFLARATDGLIDVIHSSTAITISNNYFTQHDKVMLLGHNDEYTADKIMKVTIAFNQFASGLTERMPRVRFGYAHVVNNKYDQWKMYAIGGSANPTILSEGNFYVAPNDLNAKQITKREVKENWKSWKWRSSKDLFLNGAYFVPSGFGSCAPNYSSTQSFTAAPAYMVPALTHNAGPINCVFGIPC 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02936 395 PRINTS Pollen allergen Amb family signature 71 88 IPR018082 -
Cca11g02936 395 PRINTS Pollen allergen Amb family signature 94 119 IPR018082 -
Cca11g02936 395 PRINTS Pollen allergen Amb family signature 130 146 IPR018082 -
Cca11g02936 395 PRINTS Pollen allergen Amb family signature 194 215 IPR018082 -
Cca11g02936 395 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Cca11g02936 395 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Cca11g02936 395 PRINTS Pollen allergen Amb family signature 336 360 IPR018082 -
Cca11g02936 395 PRINTS Pollen allergen Amb family signature 366 389 IPR018082 -
Cca11g02936 395 PANTHER PECTATE LYASE 1 392 - -
Cca11g02936 395 Gene3D - 48 388 IPR012334 -
Cca11g02936 395 SMART amb_all 122 319 IPR002022 -
Cca11g02936 395 PANTHER PECTATE LYASE 18-RELATED 1 392 IPR045032 GO:0030570
Cca11g02936 395 Pfam Pectate lyase 131 313 IPR002022 -
Cca11g02936 395 SUPERFAMILY Pectin lyase-like 49 386 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02936 Cca-Chr11 56656420 56658588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02936 10 395 Polysaccharide Lyase AT4G22080 63.753 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02936 K01728 - gmx:100807483 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02936 11 56656420 56658588 Cca08g02067 08 53649438 53651324 PCT