Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02934 ATGTTCCCCACCTTAGGATTTCCTAACCTTAGCCCCTCCCATGATCACAATCGAACCGTCCTCGCTGAACTTGACTTCCTCTCCGCTACAAACAATTCATCATTTCAACCTCTTCACACCAACCAGATTTCTTCTCATCATCTCCATGTAAATACTGGTTTGCAACTTCTTACCGCTAACGCCGGAAGTGACCATTCAACGGTGGATGATGGGACTTCATCGGAGGCCGAAGATAAGCGTGGCAAGATCCCTGAGCTGGCACAATTGCAAGAGGACCTTCGACGCATGGATGCAGAGAACCAAAAGCTGAAGGAGATGCTCAGTCATGTCAGCAGTAACTACGCGAACTTGCAAACGCATGTTGCAGCATTATTGCAACAGCAACGCATGGAACAAGAGGTTGTTAAAGTAAAAGATGAGGAGAAAAACCATGGAGGAAATGTGCCAAGACAGTTCCTGGATTTAGGTCCAAGTGGTACGACCGAAGTAGATGATCAAGTATCCAACTCTTCTTCGGGTGAAAGGACTCGATCAAGCACACCTCCCAACAATAAGGATAAGAAAGAGACTGATCCAGACACTGAGAAATTGAACTCTTCCAACACTACGGATACATCCACTCCAGAAGCCACTATGAGAAAAGCTCGTGTCTCAGTTCGTGCAAGATCAGAAGCACCCATGATCAGTGATGGTTGCCAATGGCGAAAATATGGACAAAAGATGGCTAAGGGAAACCCTTGTCCTCGAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCCGTTCGCAAACAAGTTCAACGTTGTGCGGATGACAGAACAATTTTGACAACAACGTACGAAGGCACTCATAACCATCCACTGCCACCAGCAGCTATGGCCATGGCGTCCACCACTGCAGCTGCCGCTAGCATGTTGCTGTCTGGGTCAATGTCCAGTGTCGATGGAATAATGAGCCCCAATTTGCTAACTAGAGCTATTCTTCCATGTTCTAACATGGCAACTCTTTCAGCCTCAGCACCATTCCCCACAGTGACATTGGATCTCACACACAACCCAAACGCGTTGCAGTACCAACGACCTCAAATCCCATTCCCATCGCAGCCTCAGAACTTTGTGTCTGCACCCACGCAAGCCCAATTGCCGCAACTGATTGCACAAGCGCTTTATAATCAATCCAAATTCTCAGGCCTTCAATTGTCTAACGATGTGGGGCCTAATAATTCCCAAGCTCCAAGACCTTCCTTGCAGCCAAACCAACAGGTCTCGCTCGCTGACACCGTCAGTGCCATCACTGCCGACCCTAACTTCACGGCGGCCCTAGCCACCGCCATCACCTCCATTATTGGCGGTTCGAATAGTCCAAATAACAATGCGAACAACAGCAACAATACTAGCAATCCCAATGTCATCAATAGTGCAACAATAATTAAGACCAATCTTGATGGAAGGAAGTTATTACTTGTGAAAGGTGATCACCCTCATAGAATTGCGTTCTGGTGTGACACTTATACTAACTTACATTGCCTTCTTCTTCTCTTTTGGGAACTTCTTTTCCATAAATCGGATAACATGAAGGCGGTCGTGTTGTGCTTGTTTGTGTCAACGCTGTTGCTTTCTGCGGTTTATTGTGCACCAAATGATGGGCTACGTAGGATTGGGCTGAAGAAGATTAATTTGGACCCTAACAATAGGCTTGCTGCTCGAATTGGGTCTAAGAATGTTGATTATCTTCGCTCTTCCATTCGAAAGTTTAAACTCCAAAACAACGTTGGTGGCACCGAGGAAACCGATATTGTTGCGTTAAAGAATTACTTGGATGCTCAGTACTTTGGTGAAATAGCCATCGGAACATCTCCTCagaagttcactgtcattttcgacacaggcagctctaatttgtgggttccatcatctaaatgtgccttctcgattgcatgctacttccatgctaaatacaagtctagcaaatcaagtacttacaggaaaaatgGGACTACTGCTGCAATTCAATATGGCACCGGAGCAATTTCTGGTTTCTTTAGCTATGACAGTGTCAGAGTTGGTGACATAGTTGTAAAGAATCAGGAATTTATTGAAGCAACTAAGGAGCCTGGTGTTACATTTTTGGCCGCCAAGTTTGATGGTATACTGGGACTTGGATTTCAAGAGATATCAGTTGGCAATGCTGTTCCAGTGTGGTATTTGTACAACATGGTTGAACAAGGTCTCATTAAGGAACCGGTATTTTCATTCTGGTTCAACCGCAACCCAGAGGAAGAGGAAGGGGGTGAGATTGTTTTTGGTGGTGTTGTTCCTGCTCACTATAAGGGAAAGCACACTTACGTGCCTGTGACCAGAAAAGGATATTGGCAGGTTACACTTTTTTTAATTCTTAATATTTTTTTTATTTACATTTTTCTCTTTGTTAATTTTCATTTTTGTTTTCAGTTTGATATGGGAGATGTACTTATTGCCGGTAAACCCACTGGATATTGTGCTGATGGTTGTTCAGCCATTGCAGACTCAGGGACTTCTTTGTTGGCAGGTCCAACGACTGTAATAACTATGATTAACCATGCAATTGGAGCATCTGGAGTTATAAGCCAAGAATGCAGGACTGTCGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGGCTGAAACACGGCCGAAGAAGATCTGTTCCCAGATTGGATTGTGCACTTTTGATGGGATTCGTGGTGTTGATACGGGTATCAAGAGTATTGTGGATGAAAATGAAAGAAAATCATCTGGTCGTCTTCATGGTGCCGCTTGTTCTGCATGTGAGATGGCAGTTGTTTGGATGCAGAACCAGCTGAGCCGAAACCAGACACAAGATCAGATACTAAACTACGTCAATCAGCTTTGTGATAAAATGCCTAGCCCGATGGGAGAATCATCTGTTGACTGTGGAAATCTTGCTTCACTACCTGTAGTGTCCTTTACTATTGGTGAAAGAACTTTTGACCTTCACCCAGAGGAGTACATACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGCATTAGCGGCTTTACTGCTATAGATATTCCACCTCCACGTGGCCCTCTCTGGATCCTTGGGGATATCTTCATGGGGCGTTATCACACGGTATTTGATTTTGGTAAACTTAGAGTGGGATTTGCTGATGCAGCTTAG 3186 0.4303 MFPTLGFPNLSPSHDHNRTVLAELDFLSATNNSSFQPLHTNQISSHHLHVNTGLQLLTANAGSDHSTVDDGTSSEAEDKRGKIPELAQLQEDLRRMDAENQKLKEMLSHVSSNYANLQTHVAALLQQQRMEQEVVKVKDEEKNHGGNVPRQFLDLGPSGTTEVDDQVSNSSSGERTRSSTPPNNKDKKETDPDTEKLNSSNTTDTSTPEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCADDRTILTTTYEGTHNHPLPPAAMAMASTTAAAASMLLSGSMSSVDGIMSPNLLTRAILPCSNMATLSASAPFPTVTLDLTHNPNALQYQRPQIPFPSQPQNFVSAPTQAQLPQLIAQALYNQSKFSGLQLSNDVGPNNSQAPRPSLQPNQQVSLADTVSAITADPNFTAALATAITSIIGGSNSPNNNANNSNNTSNPNVINSATIIKTNLDGRKLLLVKGDHPHRIAFWCDTYTNLHCLLLLFWELLFHKSDNMKAVVLCLFVSTLLLSAVYCAPNDGLRRIGLKKINLDPNNRLAARIGSKNVDYLRSSIRKFKLQNNVGGTEETDIVALKNYLDAQYFGEIAIGTSPQKFTVIFDTGSSNLWVPSSKCAFSIACYFHAKYKSSKSSTYRKNGTTAAIQYGTGAISGFFSYDSVRVGDIVVKNQEFIEATKEPGVTFLAAKFDGILGLGFQEISVGNAVPVWYLYNMVEQGLIKEPVFSFWFNRNPEEEEGGEIVFGGVVPAHYKGKHTYVPVTRKGYWQVTLFLILNIFFIYIFLFVNFHFCFQFDMGDVLIAGKPTGYCADGCSAIADSGTSLLAGPTTVITMINHAIGASGVISQECRTVVAEYGQTILDLLLAETRPKKICSQIGLCTFDGIRGVDTGIKSIVDENERKSSGRLHGAACSACEMAVVWMQNQLSRNQTQDQILNYVNQLCDKMPSPMGESSVDCGNLASLPVVSFTIGERTFDLHPEEYILKVGEGPVAQCISGFTAIDIPPPRGPLWILGDIFMGRYHTVFDFGKLRVGFADAA 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02934 1061 Pfam Saposin-like type B, region 1 934 970 IPR007856 GO:0006629
Cca11g02934 1061 ProSiteProfiles Saposin B type domain profile. 931 972 IPR008139 -
Cca11g02934 1061 Pfam Saposin-like type B, region 2 870 903 IPR008138 -
Cca11g02934 1061 MobiDBLite consensus disorder prediction 61 84 - -
Cca11g02934 1061 Gene3D Acid Proteases 551 770 IPR021109 -
Cca11g02934 1061 Pfam Eukaryotic aspartyl protease 814 1059 IPR033121 -
Cca11g02934 1061 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 839 850 IPR001969 GO:0004190|GO:0006508
Cca11g02934 1061 MobiDBLite consensus disorder prediction 180 195 - -
Cca11g02934 1061 MobiDBLite consensus disorder prediction 196 212 - -
Cca11g02934 1061 MobiDBLite consensus disorder prediction 400 419 - -
Cca11g02934 1061 CDD phytepsin 600 1059 IPR033869 GO:0004190
Cca11g02934 1061 SUPERFAMILY Acid proteases 597 1060 IPR021109 -
Cca11g02934 1061 SUPERFAMILY WRKY DNA-binding domain 221 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca11g02934 1061 SUPERFAMILY Saposin 868 970 IPR011001 -
Cca11g02934 1061 Gene3D Acid Proteases 773 1061 IPR021109 -
Cca11g02934 1061 PRINTS Pepsin (A1) aspartic protease family signature 764 777 IPR001461 GO:0004190|GO:0006508
Cca11g02934 1061 PRINTS Pepsin (A1) aspartic protease family signature 616 636 IPR001461 GO:0004190|GO:0006508
Cca11g02934 1061 PRINTS Pepsin (A1) aspartic protease family signature 839 850 IPR001461 GO:0004190|GO:0006508
Cca11g02934 1061 PRINTS Pepsin (A1) aspartic protease family signature 1034 1049 IPR001461 GO:0004190|GO:0006508
Cca11g02934 1061 ProSiteProfiles Saposin B type domain profile. 867 907 IPR008139 -
Cca11g02934 1061 SMART WRKY_cls 228 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g02934 1061 MobiDBLite consensus disorder prediction 135 222 - -
Cca11g02934 1061 ProSiteProfiles Peptidase family A1 domain profile. 610 1058 IPR033121 -
Cca11g02934 1061 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 625 636 IPR001969 GO:0004190|GO:0006508
Cca11g02934 1061 PANTHER ASPARTIC PROTEINASE-LIKE 528 1061 - -
Cca11g02934 1061 Pfam Eukaryotic aspartyl protease 609 795 IPR033121 -
Cca11g02934 1061 Pfam WRKY DNA -binding domain 230 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g02934 1061 ProSiteProfiles WRKY domain profile. 223 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g02934 1061 Gene3D WRKY domain 213 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca11g02934 1061 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 528 1061 IPR001461 GO:0004190|GO:0006508
Cca11g02934 1061 Coils Coil 86 113 - -
Cca11g02934 1061 MobiDBLite consensus disorder prediction 161 179 - -
Cca11g02934 1061 Gene3D - 867 970 - -
Cca11g02934 1061 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02934 Cca-Chr11 56622390 56634532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02934 15 463 WRKY Transcription Factor Family AT1G62300 54.175 6.46e-133 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca11g02934 Asp 8.4e-37 CL0129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02934 K08245 - gmx:100779619 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02934 11 56622390 56634532 Cca08g02072 08 53701755 53706613 PCT