Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02908 ATGGGTTGTCACGGTAGCAAGGAAAAAAAATCAACGGCAGAATATAGTGAAAGTGCTGGttaccacactgttgagccacccgcaagcgcaacaactaggcaggtacacacagcagcagcagcagcagcaccatcacagtcacagtcacagGCTCCGATGGCGGCGCCTAAAGCAGAAGGCACCATTCTGGGAAAACCCTTTGACGACATAAAGAAGTACTACACTCTGGGGAAGGAATTGGGAAGGGGCCAATTCGGGATAACCTATCTCTGCACCGATAATTCCAGCGGCGCCACCTACGCCTGCAAGTCCATTCTCAAGCGGAAGCTGGTGTCCAAGGCCGACAGAGAAGACATGAAGAGGGAGATTCAGATCATGCAGCATTTGTCCGGCCAACCCAACATTGTCGAGTTTAAGGGAGCGTATGAGGATAGGTTTTCGGTCCACCTTgttatggaactctgcgccggcggggagctcttcgatcgcatcatcgctcagggacactactccgagagagccgctgcctcgctctgcagagccattgttaacgtTGTTCACATTTGTCACTTCATGGGTGTCATGCACCGCGATCTCAAGCCTGAGAACTTCTTGCTCTCTAGTAAGGACCCTGAGGCAACGCTCAAGGCCACTGATTTTGGACTCTCTGTCTTCATTGAACAAGGCAAGGTTTACCGTGATATGGTTGGCAGTGCTTACTATGTTGCTCCTGAGGTATTGCGTCGTAGTTATGGAAAGGAAATTGATATTTGGAGTGCAGGAATCATATTGTACATTCTTTTGAGTGGTGTACCACCTTTCTGGGCTGAAACTGAAAAGGGAATATTTAACGCCATATTGGAAGGTGAAATTGATTTTGTAAGTGAACCATGGCCATCCATATCAAACAGTGCTAAAGATCTAGTCAGGAAGATGCTGACACAGGATCCAAAGAAGCGGATTACTTCTGCTCAAGTCCTTGAACACCCCTGGATGAGAGAAGGCGGAGAGGCATCTGATAAACCAATCGACAGTGCAGTTCTATCCAGAATGAAGCAATTCAGGGCAATGAATAAGCTCAAGAAGCTGGCATTGAAGGTTATTGCTGAAAATCTATCAGAAGAGGAGATTAAAGGTCTCAAAGCAATGTTTGCAAATATGGATACCGACAATAGTGGCACCATCACCTATGAAGAACTGAAGACTGGCTTGGCTCAAATCGGATCAAGACTGTCCGAGGCTGAAGTGAAGCAACTCATGGAAGCTGCTGATGTTGATGGAAATGGGTCAATTGACTATCTTGAATTCATCTCAGCTACAATGCATAGGCACAGACTTGAACGGGATGAACATCTTTTTAAAGCATTCCAGTATTTTGACAAGGATAACAGTGGGTTTATTACTAGAGATGAATTGGAGACTGCTATGACCCAACATGGAATGGGTGATGAAGCATCAATAAAGGAAATAATCTCTGAGGTGGATACAGATAACGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGCGGAACGCCACACCAGGGACAGCTATTTTAA 1569 0.392 MGCHGSKEKKSTAEYSESAGYHTVEPPASATTRQVHTAAAAAAPSQSQSQAPMAAPKAEGTILGKPFDDIKKYYTLGKELGRGQFGITYLCTDNSSGATYACKSILKRKLVSKADREDMKREIQIMQHLSGQPNIVEFKGAYEDRFSVHLVMELCAGGELFDRIIAQGHYSERAAASLCRAIVNVVHICHFMGVMHRDLKPENFLLSSKDPEATLKATDFGLSVFIEQGKVYRDMVGSAYYVAPEVLRRSYGKEIDIWSAGIILYILLSGVPPFWAETEKGIFNAILEGEIDFVSEPWPSISNSAKDLVRKMLTQDPKKRITSAQVLEHPWMREGGEASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFANMDTDNSGTITYEELKTGLAQIGSRLSEAEVKQLMEAADVDGNGSIDYLEFISATMHRHRLERDEHLFKAFQYFDKDNSGFITRDELETAMTQHGMGDEASIKEIISEVDTDNDGRINYEEFCAMMRSGTPHQGQLF 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02908 522 MobiDBLite consensus disorder prediction 1 57 - -
Cca11g02908 522 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 39 516 - -
Cca11g02908 522 CDD STKc_CAMK 74 331 - -
Cca11g02908 522 Gene3D Transferase(Phosphotransferase) domain 1 160 339 - -
Cca11g02908 522 SUPERFAMILY EF-hand 371 511 IPR011992 -
Cca11g02908 522 SMART serkin_6 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02908 522 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Cca11g02908 522 Gene3D Phosphorylase Kinase; domain 1 76 159 - -
Cca11g02908 522 Pfam Protein kinase domain 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02908 522 MobiDBLite consensus disorder prediction 1 15 - -
Cca11g02908 522 ProSitePatterns Protein kinases ATP-binding region signature. 80 107 IPR017441 GO:0005524
Cca11g02908 522 ProSitePatterns EF-hand calcium-binding domain. 495 507 IPR018247 -
Cca11g02908 522 ProSiteProfiles Protein kinase domain profile. 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02908 522 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Cca11g02908 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Cca11g02908 522 Gene3D - 340 514 - -
Cca11g02908 522 ProSiteProfiles EF-hand calcium-binding domain profile. 447 482 IPR002048 GO:0005509
Cca11g02908 522 MobiDBLite consensus disorder prediction 25 54 - -
Cca11g02908 522 PANTHER SERINE/THREONINE-PROTEIN KINASE 39 516 - -
Cca11g02908 522 ProSitePatterns EF-hand calcium-binding domain. 460 472 IPR018247 -
Cca11g02908 522 ProSiteProfiles EF-hand calcium-binding domain profile. 483 517 IPR002048 GO:0005509
Cca11g02908 522 SMART efh_1 486 514 IPR002048 GO:0005509
Cca11g02908 522 SMART efh_1 415 443 IPR002048 GO:0005509
Cca11g02908 522 SMART efh_1 379 407 IPR002048 GO:0005509
Cca11g02908 522 SMART efh_1 451 479 IPR002048 GO:0005509
Cca11g02908 522 ProSiteProfiles EF-hand calcium-binding domain profile. 411 446 IPR002048 GO:0005509
Cca11g02908 522 Pfam EF-hand domain pair 450 512 IPR002048 GO:0005509
Cca11g02908 522 Pfam EF-hand domain pair 380 440 IPR002048 GO:0005509
Cca11g02908 522 ProSitePatterns EF-hand calcium-binding domain. 424 436 IPR018247 -
Cca11g02908 522 SUPERFAMILY Protein kinase-like (PK-like) 72 340 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02908 Cca-Chr11 56411515 56416192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02908 1 522 EF-hand Containing Proteins AT4G04720 76.560 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca11g02908 Pkinase 1.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02908 K13412 - gmx:100816859 922.154