Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02901 ATGATGCAACCTGGACCCGGCATGGCCcaacaacccaaccagcaataccaacaacagcaacagcagcagcagcaacaacCCTACATGATGATGCCGCCGCAGCCTCAGCCCCCTCCCATGTGGGCCCCATCGGCCCAGCCTCCGCCCCAATCGGTCGCTCCTCCGCAGCCCACCAGCGCCGATGAGGTCCGTACCCTCTGGATCGGCGATTTGCAGTACTGGATGGACGAAAATTATCTCTACACCTGTTTCGCACACACCGGCGAGGTGGCCTCAGTTAAAGTTATTCGAAACAAACAAACTAGTCAATCAGAGGGATACGGGTTTATTGAGTTTACCAGTCGTGCTGGTGCTGAGAGAATTCTGCAGACTTACAATGGCACCATTATGCCAAACGGTGGGCAGAACTTCAGATTGAATTGGGCAACTTTTAGTGCAGGTGAGAGGCGTCATGATGACAGCCCGGACCATACCATATTTGTTGGAGACCTGGCTGCTGATGTTACGGATTATCTTCTGCAAGAGACATTTCGGGCACGATATCCCTCGGTTAAGGGGGCCAAAGTTGTAATTGATAGACTCACAGGCCGGACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGAGCTATGACTGAAATGCAAGGGGTTCTTTGTTCAACAAGGCCCATGCGAATTGGACCGGCCTCTAATAAAAACCCTAGCACTCAGTCTCAGCCAAAAGCATCATATCagaatcctcaaggggcacagaacgagaatgatccaaataatacaactatttttgtcggcaatttggatcctaatgttacggatgaccatttgagacaagtttttggacagtatggagagttggttcacgtgaagattccagctggcaaaagatgtggatttgttcaatttgCCGACAGGAGCTGCGCAGAAGAGGCTCTGCGGGTTTTAAACGGCACACTTTTGGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGCCCCTCAAACAAACAGGCCCAACCTGATCCAAACCAGTGGAATGGTAGCGGATATTATGGATACGCTCAAGGTTACGAAAATTATGGTTATGCTCCTGCTGGCCAGGACCCCAATATGTATGGCAGTTATCCTGGCTATGCAAATTACCAACCACCCCAGCAACAGCAGCAAATGGGATATAGCTAA 1194 0.4137 MMQPGPGMAQQPNQQYQQQQQQQQQQPYMMMPPQPQPPPMWAPSAQPPPQSVAPPQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERILQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGAQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDPNQWNGSGYYGYAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQMGYS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02901 397 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 394 - -
Cca11g02901 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 336 IPR000504 GO:0003723
Cca11g02901 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 236 IPR000504 GO:0003723
Cca11g02901 397 MobiDBLite consensus disorder prediction 383 397 - -
Cca11g02901 397 MobiDBLite consensus disorder prediction 377 397 - -
Cca11g02901 397 MobiDBLite consensus disorder prediction 228 265 - -
Cca11g02901 397 CDD RRM2_SECp43_like 156 235 - -
Cca11g02901 397 Gene3D - 149 242 IPR012677 -
Cca11g02901 397 SUPERFAMILY RNA-binding domain, RBD 151 244 IPR035979 GO:0003676
Cca11g02901 397 MobiDBLite consensus disorder prediction 231 265 - -
Cca11g02901 397 CDD RRM3_NGR1_NAM8_like 263 334 - -
Cca11g02901 397 MobiDBLite consensus disorder prediction 30 55 - -
Cca11g02901 397 SMART rrm1_1 265 332 IPR000504 GO:0003723
Cca11g02901 397 SMART rrm1_1 158 232 IPR000504 GO:0003723
Cca11g02901 397 SMART rrm1_1 65 140 IPR000504 GO:0003723
Cca11g02901 397 CDD RRM1_SECp43_like 65 145 - -
Cca11g02901 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 144 IPR000504 GO:0003723
Cca11g02901 397 Gene3D - 6 148 IPR012677 -
Cca11g02901 397 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 18 394 - -
Cca11g02901 397 SUPERFAMILY RNA-binding domain, RBD 26 145 IPR035979 GO:0003676
Cca11g02901 397 Gene3D - 243 345 IPR012677 -
Cca11g02901 397 MobiDBLite consensus disorder prediction 1 59 - -
Cca11g02901 397 MobiDBLite consensus disorder prediction 1 29 - -
Cca11g02901 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 131 IPR000504 GO:0003723
Cca11g02901 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 329 IPR000504 GO:0003723
Cca11g02901 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 222 IPR000504 GO:0003723
Cca11g02901 397 SUPERFAMILY RNA-binding domain, RBD 248 360 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02901 Cca-Chr11 56350748 56354899 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02901 263 342 Eukaryotic Initiation Factors Gene Family AT4G34110 35.632 8.38e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02901 - - gmx:100796848 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02901 11 56350748 56354899 Cca08g02109 08 54184273 54188998 PCT