Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02900 ATGGATTGCGACGAACctccctctccctctccctttccccattcttcttccctTCTGAAGGACATTTCCAACTTCACAACCCCCAGACGACCCCCATTCTCTCTCACCGCCCAATCTCCCTCCACCCAATTCTTCACCGCCTCCAAGCACGCCTCCTTCCTCCGCCGTCCCAACAAATCAACCGCCGCCAAGAAACTCAAGGCCTTCCAATTGGAGCAATCCCAGTCCTCCCGCAAGGCCCAAATAAAAAAGGAGCAGTCCCTCAAATCCCTCGCTAAGTCCCTATCCGTTTGGCTCAACTTCTTACTCCAAAACCCTACTTcctgcggctgccacttctccgcccctgccgatgccgctccctcccctAGCGGCAAGCGAGACGGCGCCCCCCCAACCTCCGTCGCCGTCGATTCCACGTGGCGAACTCCCAAGCGCCCGAGGAAGACGTCCTTTGCTAAGGACAGTGCACCCGCGGATGTTCCTGATCCCTCATTTTCTCACCTCAGGGATTCTCTCAAGGACCTCTGCAGTTTCGATGATTTGAAGCAGCGAATGAGGGTTTATCTTAGCCTCGCAGCTTGTAAAGAGATCTTCCAACAAATGAATCGCGTCACCAAGACTATTGATGAAGGGAGGCTGAATATGAAGGCGCATTGCCCTGTAGTAACCGAACTTGGGTTGAAGGATAAGGCCACCAGAATCCTCATGTGTTATAATCCAATTTGGCTGCGAATTGGATTGTATATAATTTTTGGGGGTGATTCCttggtgttaaatggtgatgttgattctgatcaagatgttgtgttCTTGAGAATGGTCATTGATAAATTATTTTTCTCGCACGAGGGTTTAGCTAAAGCGTATGCTTATAACAAGATGGTTGAAGGCGTCTACAGGTCGGGTTACTATGAGAATTTGGGGAATGTGATTTTGAAGAGAATTTTGTTGCTTGTGCTTGTTCTGGATAAAGCTAAATGCCAGAGTTACCTCCCACTGGAATATGGTATTGATGGATTGGATGGGGGTTCCCCTTTGTTATTCAAACCAGAATCCAGGATTAAATCAAGTAGTCAGCTGATTCATGAATTTCTATCGTCTGATGTAATGCATGGAGAAGGCAATCTTCTAACGCATTTGGTGATTTTAGGTTACAAATTATCTCATCAACAGGAGCCTCTTGTCGAGTATGATTTCAGGGTCAGAGATTTGTTTGTAGATCTCCAAGATGGATTAAAATTGTGCAGAGCAATTCAGCTTTTGCAGCAGAATTCTTCGATCCTCATGAAAATCGTGGTTCCCCCTGATACTTCTAAGAAAAAACTGGCCAACTGCGCTCTTGCCCTAAAATATATTAGGCAAGCTGGTGGGTCACTACTTGATGAAGATGGCATTACGATTGTGGCAGATGATATTGTTAATGGAGACAAAGAACTTACACTCTCCTTGCTCTGGAATATGTTTGTTCATTTGCAGCTACCTCTTTTGGTTGATAAAACAAGTTTAGTTGGGGAAATTTCTAAAATTCGAGGATTTGGCACGGATCTTATAAACAATGCGAATTCTAGTTCTCTTGAATTGCTTTTGAATTGGATTCAGGCAGTTTGTGACAGTTATGATTGTACAATTGACGATTTCCATTCCCTTGTGGATGGCAAAGCTATCTGGTGCTTACTTGATTACTACTTCCAGAAAGAACTTCATAATTCCTGTTCATTGAAGGTCTTTAACTTCTTTAGATTCCTGCTGACTGCTATTAATAACTTGTTGTTTGTAAGCTTTATTTTTCATTTTTTACAGGAAGTTAATAAGAAAAGTGGCAAAGCATCAATTATGTCAGTCAACGAATATTCAGATGCACTTTATAATTTTATATTATCCCAAAAGTTGACTACATTACTGGGGAACTTCCCAGAGGTACTCCAAATTAGTGAGCTACTTCAATATAATGGTGCTTGCAGCGATAGAAGCGTGGTGATTTTGTTGGTTTTCCTAGCAAGCCAATTATTTGTCAAGAAAAATGTGGATCACTTAAATTTCCATAAACTCTTGGGTTATGACTGTCAAAGTCCAAACCGTAGACATTTGAGGATGGTACGGTGTCTTTCAAATTTTGAATCAGTACAAAAGACTGATGCTTTCGATGTGCATGGCAATGGAGATGCTGCGAGAAAATTCAAGGCCATCCAAGCTTGGTGGGAAGATATGGCGGAAAGAAACCGTATCAATAAACCAGCTGTCTCTAGTTTGCAAATATCCAGAACCACTGAATGCAGCACCAACATTAGAAGAGAAAATGCTGCAAGAACAATACAACTGCATCTCAGAGGATTGGTTGTACGGCGCAAATTTCTGAAGATGGTAAATGCAGTTGCCCTTTTGCAAACTGTTTTCAGAGCTTGGCTAAAAGTGAAGCAAGAGCCAGTATGCATGATATTATCTTCTGTACGAGTTTGTGACTCTTCATGTGAAATATTGAAGCAATCAGAGACATATAAGAGATATGCTATGCTTTTCATACATAGACATTCCTTTCTGAGGTTGAAGAGGTCAGCACAACTTATCCAGCAAGCAGTTAGGAGTTGGCTCTGTAGGAGGCATCAGCAAGAATGTAGTATAGGTCCTACTCATAATCTTATGATTTCAGATATGGTGGTGGCTGCAGTCACTGTTCAGAAATTTGTTCGTCGTTGGATGGCACAATCTAGATATATTCATCAGCTAGAGCAGAAAGAGAAAGCTTTAAATTTTTCCCAACAGAAAGTCACTTTTGATCTTCAAACAAATGCAGCCATTACCATTCAGTTCGCTTGGAAAAAGTTCATATGCTGCAAGTCTACTCGGAAGCAACACTTTTTTGCTACTAAAATTCAACAAAATTTCCATAGGTGGTTGTTGAGAAAAAGGTTTTTAAATCAGATTCAAGCTGTCATAAAAATCCAATCTTACTTTCGAATGTGGAGATGTGTAAATGCTTTTCAGCACTTCAAAATTGAGTTTAAGGCAGCTGTAGTCATTCAATCTTTCTTTCGAGGATGGTTTGCACAAAAGGATGCTTGTGCACGTAGGAATCATATTGTTGAAATTCAAAAGCATTGCCGTGGTTGGCTTGTGAAACGGGACTTCTTGTTCCAAAGAGATGCTGTAATAAAGATCCAGTGTGTGATTCGAAGCTTGAAGTGCCAGAAGGCTCTCAATTGCCAGAAAGATGCTGCTTTGGAGATCCAGCGTTTTATAAGGGGGCATTTATCTCGGAATCAGCTATTAGGTAGTGCTTCCAAGTCACGCAGAGCTATTCCTGCTAGTCACATTTCAAGATCATTTGGTCTTTGTAGTTTTCAACTGGAACTATTCTTGTTCTCGGTTGTGAAATTGCAACGATGGTGGAAGGGTTTCCTGTTGCTTAAATTAATGAATAAGTCGGCCATCATTATTCAGTCATGTATCCGTGGGTGGATAGTCAGGCGAAAAGCTACTGTTTACAGACACCATCTTGTCATCCAAGAAAATGCTGCGTTGGTGATTCAACGCTATATTAGGGGGAATTTAACTCGAAATCGGATACTAGGTAATACATTTTACGAGTTCATTCCTGCTGGATGCATTTCCAGACCAGTTGGCTGTCGTAGTTTCCGACTGGAACTATTTTTGCTTTCGGTTGTGAAATTACAACGATGGTGGAAGGGTCTCTTGTTAAAAAAATTGATGACAAAGTCTGCTATTGTCATTCAGTCTTGTACTCGTGGGTGGATAGCCAGGCGAAAGGCCACTATTCAAAGACATCGTATTACTGTCATCCAATCCCACTGGAAAGGTTACCTTGCACGTAAAGAGTCAAAAGAACAGTTATTAGATTTGCGCGTGAGAATGCAAAAGTCTGCCAGAAATGTGGATGACAGCAAGCGTCTCATAAACAGACTCTTAGCAGCGCTTTCAGAGCTACTTAATATGAAGAGTCTTAGTAACATCCTTCATACTTGTTCAACTTTGGATATGGCTACAGGGCATTCTCAGAAATGTTGTGAAGAACTTGTGGCTGCAGGGGCTATTGATACCTTGCTGAGGCTAATTCAAACAGTCAGCCGGAGTATACCTGATCAGGAGGTTCTAAAGCATGCTTTGTCAACTCTCCGAAATCTCGCCCGATATCCTCATCTACTTCAAGTTCTGATCCAAACTCGTGGCTCTGTACAGATAATCGTCTTGGAGTTATTGAGGTTGAATAAAAACGAGGGCTACTTCGTTGTTTCTGAACTTTTGAAGAAGATATGTTCAACTCGTATAGGCGTTGAAACGATATTCAAGTCCCCTGCCCTGCTAAAACGACTGCACGGTCTTGTTGAGAAAAGAGATCCTAGGGCTCCTAGCCTGGCTATCAAAGAAAACAGAGATCCTAGGACCACTAGCCGGtatggagagttggttcacgtgaagattccagctggcaaaagatgtggatttgttcaatttgCCGACAGGATCTGCGCAGAAGAGGCTCTGCGGGTTTTAAACGGCACACTTTTGGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGCCCCTCAAACAAACAGGCCCAACCTGATCCAAACCAGTGGAATGGTAGCGGATATTATGGATACGCTCAAGAAATTCAAATTGTGGAAAATCTAGCTGAAGTTGAGAAGTTAGTCAAAAGCAAATCAAATGAAGAAAAGGCTAAAGAAGCTGCTGTTGAAAAAGATCCTAATACGTTGGAGTGTCCACTCAATGCGTTTTCCCTTTTCTTGCAGGAAGAGATGAGAAAACTCACAAAAAGCAACACAATAATGCATCATATCagaatcctcaaggggcacagaacgagaatgatccaaataatacaactatttttgtcggcaatttggatcctaatgttacggatgaccatttga 4917 0.395 MDCDEPPSPSPFPHSSSLLKDISNFTTPRRPPFSLTAQSPSTQFFTASKHASFLRRPNKSTAAKKLKAFQLEQSQSSRKAQIKKEQSLKSLAKSLSVWLNFLLQNPTSCGCHFSAPADAAPSPSGKRDGAPPTSVAVDSTWRTPKRPRKTSFAKDSAPADVPDPSFSHLRDSLKDLCSFDDLKQRMRVYLSLAACKEIFQQMNRVTKTIDEGRLNMKAHCPVVTELGLKDKATRILMCYNPIWLRIGLYIIFGGDSLVLNGDVDSDQDVVFLRMVIDKLFFSHEGLAKAYAYNKMVEGVYRSGYYENLGNVILKRILLLVLVLDKAKCQSYLPLEYGIDGLDGGSPLLFKPESRIKSSSQLIHEFLSSDVMHGEGNLLTHLVILGYKLSHQQEPLVEYDFRVRDLFVDLQDGLKLCRAIQLLQQNSSILMKIVVPPDTSKKKLANCALALKYIRQAGGSLLDEDGITIVADDIVNGDKELTLSLLWNMFVHLQLPLLVDKTSLVGEISKIRGFGTDLINNANSSSLELLLNWIQAVCDSYDCTIDDFHSLVDGKAIWCLLDYYFQKELHNSCSLKVFNFFRFLLTAINNLLFVSFIFHFLQEVNKKSGKASIMSVNEYSDALYNFILSQKLTTLLGNFPEVLQISELLQYNGACSDRSVVILLVFLASQLFVKKNVDHLNFHKLLGYDCQSPNRRHLRMVRCLSNFESVQKTDAFDVHGNGDAARKFKAIQAWWEDMAERNRINKPAVSSLQISRTTECSTNIRRENAARTIQLHLRGLVVRRKFLKMVNAVALLQTVFRAWLKVKQEPVCMILSSVRVCDSSCEILKQSETYKRYAMLFIHRHSFLRLKRSAQLIQQAVRSWLCRRHQQECSIGPTHNLMISDMVVAAVTVQKFVRRWMAQSRYIHQLEQKEKALNFSQQKVTFDLQTNAAITIQFAWKKFICCKSTRKQHFFATKIQQNFHRWLLRKRFLNQIQAVIKIQSYFRMWRCVNAFQHFKIEFKAAVVIQSFFRGWFAQKDACARRNHIVEIQKHCRGWLVKRDFLFQRDAVIKIQCVIRSLKCQKALNCQKDAALEIQRFIRGHLSRNQLLGSASKSRRAIPASHISRSFGLCSFQLELFLFSVVKLQRWWKGFLLLKLMNKSAIIIQSCIRGWIVRRKATVYRHHLVIQENAALVIQRYIRGNLTRNRILGNTFYEFIPAGCISRPVGCRSFRLELFLLSVVKLQRWWKGLLLKKLMTKSAIVIQSCTRGWIARRKATIQRHRITVIQSHWKGYLARKESKEQLLDLRVRMQKSARNVDDSKRLINRLLAALSELLNMKSLSNILHTCSTLDMATGHSQKCCEELVAAGAIDTLLRLIQTVSRSIPDQEVLKHALSTLRNLARYPHLLQVLIQTRGSVQIIVLELLRLNKNEGYFVVSELLKKICSTRIGVETIFKSPALLKRLHGLVEKRDPRAPSLAIKENRDPRTTSRYGELVHVKIPAGKRCGFVQFADRICAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDPNQWNGSGYYGYAQEIQIVENLAEVEKLVKSKSNEEKAKEAAVEKDPNTLECPLNAFSLFLQEEMRKLTKSNTIMHHIRILKGHRTRMIQIIQLFLSAIWILMLRMTI 1638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02900 1638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1470 1514 IPR000504 GO:0003723
Cca11g02900 1638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1002 1077 IPR027417 -
Cca11g02900 1638 Pfam Calponin homology (CH) domain 401 491 IPR001715 GO:0005515
Cca11g02900 1638 ProSiteProfiles IQ motif profile. 1023 1052 IPR000048 GO:0005515
Cca11g02900 1638 ProSiteProfiles IQ motif profile. 1169 1196 IPR000048 GO:0005515
Cca11g02900 1638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1219 1284 IPR027417 -
Cca11g02900 1638 ProSiteProfiles IQ motif profile. 1260 1288 IPR000048 GO:0005515
Cca11g02900 1638 ProSiteProfiles IQ motif profile. 1237 1265 IPR000048 GO:0005515
Cca11g02900 1638 Gene3D - 1285 1460 IPR011989 -
Cca11g02900 1638 ProSiteProfiles IQ motif profile. 885 914 IPR000048 GO:0005515
Cca11g02900 1638 SUPERFAMILY RNA-binding domain, RBD 1470 1541 IPR035979 GO:0003676
Cca11g02900 1638 MobiDBLite consensus disorder prediction 117 160 - -
Cca11g02900 1638 Pfam IQ calmodulin-binding motif 1263 1279 IPR000048 GO:0005515
Cca11g02900 1638 Pfam IQ calmodulin-binding motif 976 994 IPR000048 GO:0005515
Cca11g02900 1638 Pfam IQ calmodulin-binding motif 1071 1089 IPR000048 GO:0005515
Cca11g02900 1638 Pfam IQ calmodulin-binding motif 1171 1188 IPR000048 GO:0005515
Cca11g02900 1638 Pfam IQ calmodulin-binding motif 888 905 IPR000048 GO:0005515
Cca11g02900 1638 Pfam IQ calmodulin-binding motif 1047 1065 IPR000048 GO:0005515
Cca11g02900 1638 Pfam IQ calmodulin-binding motif 1141 1158 IPR000048 GO:0005515
Cca11g02900 1638 Pfam IQ calmodulin-binding motif 1027 1043 IPR000048 GO:0005515
Cca11g02900 1638 Pfam IQ calmodulin-binding motif 1002 1019 IPR000048 GO:0005515
Cca11g02900 1638 Pfam IQ calmodulin-binding motif 1238 1256 IPR000048 GO:0005515
Cca11g02900 1638 SMART iq_5 848 870 IPR000048 GO:0005515
Cca11g02900 1638 SMART iq_5 1022 1044 IPR000048 GO:0005515
Cca11g02900 1638 SMART iq_5 764 786 IPR000048 GO:0005515
Cca11g02900 1638 SMART iq_5 999 1021 IPR000048 GO:0005515
Cca11g02900 1638 SMART iq_5 1168 1190 IPR000048 GO:0005515
Cca11g02900 1638 SMART iq_5 1045 1067 IPR000048 GO:0005515
Cca11g02900 1638 SMART iq_5 1236 1258 IPR000048 GO:0005515
Cca11g02900 1638 SMART iq_5 973 995 IPR000048 GO:0005515
Cca11g02900 1638 SMART iq_5 1259 1281 IPR000048 GO:0005515
Cca11g02900 1638 SMART iq_5 787 809 IPR000048 GO:0005515
Cca11g02900 1638 SMART iq_5 884 906 IPR000048 GO:0005515
Cca11g02900 1638 SMART iq_5 950 972 IPR000048 GO:0005515
Cca11g02900 1638 SMART iq_5 1138 1160 IPR000048 GO:0005515
Cca11g02900 1638 SMART iq_5 1068 1090 IPR000048 GO:0005515
Cca11g02900 1638 ProSiteProfiles Calponin homology (CH) domain profile. 371 493 IPR001715 GO:0005515
Cca11g02900 1638 Gene3D - 387 493 IPR036872 -
Cca11g02900 1638 SUPERFAMILY Calponin-homology domain, CH-domain 317 566 IPR036872 -
Cca11g02900 1638 SUPERFAMILY ARM repeat 1306 1454 IPR016024 -
Cca11g02900 1638 ProSiteProfiles IQ motif profile. 1069 1098 IPR000048 GO:0005515
Cca11g02900 1638 Pfam Armadillo/beta-catenin-like repeat 1338 1383 IPR000225 GO:0005515
Cca11g02900 1638 PANTHER UNCHARACTERIZED 8 575 - -
Cca11g02900 1638 PANTHER UNCHARACTERIZED 601 1187 - -
Cca11g02900 1638 PANTHER UNCHARACTERIZED 1172 1468 - -
Cca11g02900 1638 MobiDBLite consensus disorder prediction 14 39 - -
Cca11g02900 1638 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1349 1396 IPR000225 GO:0005515
Cca11g02900 1638 SMART arm_5 1338 1383 IPR000225 GO:0005515
Cca11g02900 1638 Gene3D - 1464 1530 IPR012677 -
Cca11g02900 1638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 923 1020 IPR027417 -
Cca11g02900 1638 PANTHER ABNORMAL SPINDLE MICROTUBULE ASSEMBLY 8 575 - -
Cca11g02900 1638 PANTHER ABNORMAL SPINDLE MICROTUBULE ASSEMBLY 601 1187 - -
Cca11g02900 1638 PANTHER ABNORMAL SPINDLE MICROTUBULE ASSEMBLY 1172 1468 - -
Cca11g02900 1638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1470 1521 IPR000504 GO:0003723
Cca11g02900 1638 ProSiteProfiles IQ motif profile. 1139 1166 IPR000048 GO:0005515
Cca11g02900 1638 ProSiteProfiles IQ motif profile. 765 793 IPR000048 GO:0005515
Cca11g02900 1638 ProSiteProfiles IQ motif profile. 1000 1029 IPR000048 GO:0005515
Cca11g02900 1638 Gene3D - 1137 1193 - -
Cca11g02900 1638 Gene3D - 1001 1046 - -
Cca11g02900 1638 Gene3D - 949 1000 - -
Cca11g02900 1638 Gene3D - 1047 1100 - -
Cca11g02900 1638 Gene3D - 1235 1284 - -
Cca11g02900 1638 Gene3D - 764 808 - -
Cca11g02900 1638 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02900 Cca-Chr11 56333000 56346218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02900 937 1075 Myosins gene family AT5G43900 30.769 6.84e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02900 K16743 - gmx:100817636 1820.82