Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02891 ATGATGTCCTTAGTGAAGTACACAGCATTACCTGCTTCCTCAAGTCATGTTCCAAGGCCTCAGCTCTTCACATTACCCTCTATTCACAATGTTCAACAAAGCACTGAATCCCATTTCTCTTCCCTCAGACCTCTTTACATTTCATCCACTCACAACTTCACATTGTCACCAATACTCAGAAGGAGGGTTACTGAGTGCCAGGCCTATGAAGCAGATAGGTCACAGCCTCTAAAGATTAACATTGATGAAGAGACAGGGATTGAGGCAGCTCAGAGGCTCAAAATTGGTTTGTATTTTGCTACTTGGTGGGCTCTCAATGTGGTCTTCAACATATACAACAAGAAGGTTCTCAATGCTTTTCCTTACCCCTGGCTTACTTCCACTTTGTCCCTTGCTGCTGGCTCTCTCATTATGCTAATCTCATGGGCCACAAGGGTTGCTGATGTCCCAAAAGTTGATTTCGAGTTCTGGAAGGCCCTCTTTCCTGTTGCGGTGGCACACACAATTGGGCATGTTGCAGCCACGGTGAGTATGTCCAAAGTCGCTGTTTCATTTACTCACATCATCAAGAGTGGAGAGCCTGCATTCAGTGTCCTCGTATCAAGATTCTTGCTAGGGGAAGCATTCCCTTTGCAGGTTTACCTGTCACTTGTGCCAATTATAGGAGGTTGTGCACTTGCTGCTGTGACGGAGCTCAATTTCAATATGATTGGGTTTATGGGGGCTATGATATCCAATTTGGCCTTTGTGTTTCGGAATATATTCTCAAAGAAGGGAATGAAAGGGATGTCTGTTAGTGGAATGAACTACTATGCTTGTCTTTCCATATTGTCCCTACTGATTCTCACACCTTTTGCCATTGCTGTGGAGGGCCCAAAGATGTGGGCTGCTGGCTGGCAAACAGCCTTGTCTCAGATTGGTCCCAATTTTGTCTGGTGGGTAGCTGCTCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCTTACATGTCTCTTGATCAGATTTCTCCCTTAACATTTAGCATAGGGAACACAATGAAGAGAATTTCAGTAATTGTCTCCTCCATCGTTATCTTCCACACACCAATTCAGCCCGTCAATGCCCTTGGGGCAGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGGTACGTGGTGACAATGCAATGTGGTTTTGTGCATGTCACAAAAAATTTGTGAATATGGTGATAGTCTTGTTTCTCTTCATATCCTCTCTGACAGCAATCTCACATGGATTAGATGAAACTCCATCTTTCCCCAACTACTTTCTCTTTGGCACTGCTTCTTCTTCGTACCAGTATGAAGGAGCTTACTTGAGTGACGGCAAAGGGATGAGCAACTGGGATGTCTTCACTCACAAACCAGGTAGTATAGATGATGGAAGTAATGGTGATGTTGCTGTTGATCAATACCATCGCTATCTGGAGGATATTGATCTAATGAAAGCTATAAAAGTCAACAGCTACCGGTTTTCAATATCATGGGCAAGAATTCTACCAGAAGGTAGATTTGGAGAAGTCAACTTGGCGGGTATCAACTACTATAACAAACTTATAAATGCGTTGCTACTCAAAGGTATCCAACCGTTTGTAACATTATTTCACTTTGACATCCCTCAAGAGCTTGAAGACAGATACGGAGCTTGGTTAAGTCCCCAATCACAGGAAGATTTTAAATTCTTTGCGGATATCTGTTTTAAATACTTGGGTGACAGAGTCAAGTATTGGGTCACCTTCAATGAGCCAAATTATATAGTCCCACTTGCCTATCGTATAGGTATATTCCCACCATGCCGTTGCTCTAGCAAATTTGGAGATTGCAATGAGGGAGATTCAGAGAAAGAACCTTTTGTGGCAGCCCATAATATGATCCTATCACATGCAGCTGTAGTTGATATGTATAGAAACAAATACCAGACTGAGCAAGGGGGGAAAATAGGCATTGTCCTACACTGTGACTGGTTTGAGCCGTTAAGCAATTCCACAGAAGATAAATTGGCCACTGAAAGAGCACAATCATTCAACATTAAATGGATATTGGATCCAATCTTGTTCGGTAAGTACCCAAAAGAGATGGAGATGATTCTAGGAACCATCTTACCTAAATTTTCCAGCAATGACAAAGCTAAATTGAGGAGAGGACTGGATTTCATTGGCATAAACCACTATGCAAGTTACTATGTCCGAGACTGCATATCAACCGTGTGTGAATCTGGGCAAGGAGTCACCAGAACAGAGGGTTTATATCAACAAACTTCACTAAAAAACGGTGTCCCAATTGGAGAGCTTACTCCATGTGATTGGCTCAACGTTTATCCACAAGGCATGAAGAAAATTCTTATCTATCTAAAAGACAGATATAATAACACTCCAATGTTCATCACCGAAAATGGATATGGCAATTTGAATGATCCAGATCTTACCGAGGAAGAATATCTTAATGATTTTAAGAGAATAGAGTACATGTCTGGTCACTTAGATAACCTAATGGCAGCAATAAGGGAAGGAGCAGATGTGAGAGGTTACTTtgcctggtccttgctcgacaactttgagtggaaatttgggttttcattgagatttggacttcaccacgttgatttCGCCACACTGAAGAAAACCCCAAAATCCTCAGCAAGTTGGTACAAACATTTCATTGAAAAGTATACAACCGAGAGCATTGTGGCCGAACAAACAATAGAAGGCAAATACCAAGCTTAG 2742 0.4103 MMSLVKYTALPASSSHVPRPQLFTLPSIHNVQQSTESHFSSLRPLYISSTHNFTLSPILRRRVTECQAYEADRSQPLKINIDEETGIEAAQRLKIGLYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLIMLISWATRVADVPKVDFEFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEAFPLQVYLSLVPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGMSVSGMNYYACLSILSLLILTPFAIAVEGPKMWAAGWQTALSQIGPNFVWWVAAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSIVIFHTPIQPVNALGAAIAILGTFLYSQVRGDNAMWFCACHKKFVNMVIVLFLFISSLTAISHGLDETPSFPNYFLFGTASSSYQYEGAYLSDGKGMSNWDVFTHKPGSIDDGSNGDVAVDQYHRYLEDIDLMKAIKVNSYRFSISWARILPEGRFGEVNLAGINYYNKLINALLLKGIQPFVTLFHFDIPQELEDRYGAWLSPQSQEDFKFFADICFKYLGDRVKYWVTFNEPNYIVPLAYRIGIFPPCRCSSKFGDCNEGDSEKEPFVAAHNMILSHAAVVDMYRNKYQTEQGGKIGIVLHCDWFEPLSNSTEDKLATERAQSFNIKWILDPILFGKYPKEMEMILGTILPKFSSNDKAKLRRGLDFIGINHYASYYVRDCISTVCESGQGVTRTEGLYQQTSLKNGVPIGELTPCDWLNVYPQGMKKILIYLKDRYNNTPMFITENGYGNLNDPDLTEEEYLNDFKRIEYMSGHLDNLMAAIREGADVRGYFAWSLLDNFEWKFGFSLRFGLHHVDFATLKKTPKSSASWYKHFIEKYTTESIVAEQTIEGKYQA 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02891 913 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 430 444 IPR033132 -
Cca11g02891 913 Pfam Glycosyl hydrolase family 1 425 895 IPR001360 GO:0004553|GO:0005975
Cca11g02891 913 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 93 385 IPR004696 GO:0016021|GO:0022857|GO:0055085
Cca11g02891 913 PRINTS Glycosyl hydrolase family 1 signature 721 735 IPR001360 GO:0004553|GO:0005975
Cca11g02891 913 PRINTS Glycosyl hydrolase family 1 signature 867 879 IPR001360 GO:0004553|GO:0005975
Cca11g02891 913 PRINTS Glycosyl hydrolase family 1 signature 822 833 IPR001360 GO:0004553|GO:0005975
Cca11g02891 913 PRINTS Glycosyl hydrolase family 1 signature 799 807 IPR001360 GO:0004553|GO:0005975
Cca11g02891 913 PRINTS Glycosyl hydrolase family 1 signature 843 860 IPR001360 GO:0004553|GO:0005975
Cca11g02891 913 Pfam Triose-phosphate Transporter family 93 382 IPR004853 -
Cca11g02891 913 SUPERFAMILY Multidrug resistance efflux transporter EmrE 135 229 - -
Cca11g02891 913 PANTHER GLYCOSYL HYDROLASE 400 897 IPR001360 GO:0004553|GO:0005975
Cca11g02891 913 PANTHER BETA-GLUCOSIDASE 45 400 897 - -
Cca11g02891 913 Gene3D Glycosidases 412 904 - -
Cca11g02891 913 SUPERFAMILY (Trans)glycosidases 424 894 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02891 Cca-Chr11 56256957 56265066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02891 390 893 Glycoside Hydrolase AT4G21760 55.754 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02891 K05350 - cit:102607393 1273.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02891 11 56256957 56265066 Cca08g02119 08 54291752 54295026 PCT