Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02888 ATGGACACCAACACACTCTCACTCTCGTCACTTCTTCCTACTTTGGGTCTTCTTTCGTCTCAAAAGCCAACTTGTACTCGTTACATCCTTCCTTCACATAAACATTTTTTCAAACACTTTTCCTCCACTACTCGCACCTTCAAGTTCACTACTCCACAAGCCATTCTAAACCCCCCTACAGCGGTCACCACTCCCACTCTCACACAAATATGCCAACCGCATGTTCCTCAGCATATATTACAAAGGATGGAAGAGATTGGATATGTAATGCCCACCGATATCCAAAGGGAAGCATTGCCTTACCTTTTTTCAGGGCGTGACTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACACTCACGTACCTGCTTTTGATCCATTCCATCATCAATGCTGAAAAATCCTCTGTGCAAGCCTTAGTTGTGGTGCCCACCCGTGAACTTGGCATGCAAGTCACTAAAGTTGCTAGGACATTGGCTGCAAGGCCAACTGGAGTCGATGGGGAGCACAAGTCATGTTCCATCATGGCTCTGCTAGACGGAGGAACACTGAAAAGACACAAGAGTTGGTTAAAGGCAGAGCCTCCAGCAATAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACATATTTTTTCACTTGAAACTGTACGGGTGCTGATTGTTGATGAGGTTGACTGCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATTTTGACATCATATTCTTCTTGCAATAACCGTCAGACAGTTTTTGCCAGTGCATCTATACCACAGCACAACCGATTTATTCATGACTCTATGCAGCAGAAATGGACAAAAAGAGATGTGGTCCATATTCATGTCAGTGCTGTGGAGCCCATGCCATCACGCCTATATCATAGATTTATAATATGTGATACCAAAAGAAAATTACAAACCCTGTTATCCTTGATACAATCTGATGCACCTGAGTCTGGCATCATATTTGTTGCTGAGCAGTCTGAGAAGTCAAAAAAGGCTGGAAATGCTCCATCAACATCCCTTCTGATTGACTTTTTGAAGACATCATACCAAGGTGATTTAGATATCCTCCTCCTTGAAGACAAAATGAATTTCAATTCACGAGCAGCTTCACTGTTGGAGGTTAGAAAGGGAGGTGGCTATCTTCTTGTAGCGACAGATATAGCTGCTAGGGGAGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATCTGCCAAGGACTGCTATAGATTATCTTCATCGAGCAGGGCGAACTTGTAGAAAACCCTTTTCTGACATCAATTGTACTGTTACCAGCATTATAGTTTCGGATGAGCGATTTGTCCTGCAGAGATATGAAAATGAGTTGATGTTTAACTGTGAAGAGCTTGTTCCATAA 1404 0.4274 MDTNTLSLSSLLPTLGLLSSQKPTCTRYILPSHKHFFKHFSSTTRTFKFTTPQAILNPPTAVTTPTLTQICQPHVPQHILQRMEEIGYVMPTDIQREALPYLFSGRDCILHAQTGSGKTLTYLLLIHSIINAEKSSVQALVVVPTRELGMQVTKVARTLAARPTGVDGEHKSCSIMALLDGGTLKRHKSWLKAEPPAIVVATVGSLCQMLERHIFSLETVRVLIVDEVDCIFNSSKQVSSLRKILTSYSSCNNRQTVFASASIPQHNRFIHDSMQQKWTKRDVVHIHVSAVEPMPSRLYHRFIICDTKRKLQTLLSLIQSDAPESGIIFVAEQSEKSKKAGNAPSTSLLIDFLKTSYQGDLDILLLEDKMNFNSRAASLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDINCTVTSIIVSDERFVLQRYENELMFNCEELVP 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02888 467 Gene3D - 62 281 IPR027417 -
Cca11g02888 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 433 IPR027417 -
Cca11g02888 467 SMART ultradead3 87 302 IPR014001 -
Cca11g02888 467 Pfam DEAD/DEAH box helicase 92 265 IPR011545 GO:0003676|GO:0005524
Cca11g02888 467 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 39 466 - -
Cca11g02888 467 SMART helicmild6 347 431 IPR001650 -
Cca11g02888 467 CDD SF2_C_DEAD 300 429 - -
Cca11g02888 467 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 310 467 IPR001650 -
Cca11g02888 467 CDD DEADc 79 265 - -
Cca11g02888 467 Pfam Helicase conserved C-terminal domain 310 429 IPR001650 -
Cca11g02888 467 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 39 466 - -
Cca11g02888 467 Gene3D - 295 466 IPR027417 -
Cca11g02888 467 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 99 281 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02888 Cca-Chr11 56238783 56245181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02888 79 456 Eukaryotic Initiation Factors Gene Family AT1G72730 26.562 5.49e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02888 - - gmx:100786205 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02888 11 56238783 56245181 Cca11g02888 11 56238783 56245181 ECH