Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02887 ATGGAAAATTTCATCTCCTCCTCATCTTCTCCCTTACCTCTAACTATGTCACACATTTCAACTCCGTCATCTTCCGCGGCTTTCGACGACGCTTCCGAGGATGCCTGCAGCATATGTCTTGAGCCCTTCGGCACCGATGACCCCGCCACCATTACCAGTTGCAAACATGAATATCATCTGCATTGTATTCTTGAATGGTCACAGAGAAGCAAAGAATGCCCTATATGTTGGCAGTTACTTATCTTGAAAGACCCTGCCAGCCAAGAGCTTCTAACTGCAGTTGAGGCTGAAAAATGCTTAAGTTCAAGGACTGTGCATTCACACGCATTCGACAATTCTCGTAGCCCCCTTGAACGGCTTAACAATGACCATCAGGATGATTCTTGTTCAGATGACTCTGATTTTGATGAACAACTTATGCAGCACATAGTTGCTGCTGCAAGTAGAGCTCGTTATATCTGCAGAAGGGAAAGGCAGAGATCCCCTGGAGCAGGTCCTTCCGAGGTTCTAGTTTTTAACACTTCTATGCATGCCTCAGGGATGCAACCAACACTTACAACTTCACCTTCTGGGGGTACTTCACCAACTTTTGGTGTACCATCTGCTGCTCACAATCAACCTCCAACATCTGCTTTTTCCTCTGTCGGAATGGTTGCAACAGATACTTCTTCTGAGAGTGATATGCCTTCCAAACCCAGAGTTGTCTATAGCCAGCCATCACCTGAGAGTGCTAGGAAACTAAACACTTCTGAGATGTTCTCCTTCCCTGAGTCCATCAAATCCAAACTTTCTGCTGCTTCAGCCAGATGTAAGGAATCAATTTCAAAAAATACTCGTGGTCTTAAAGAGAAGTTAATTGCACGTAATGCCTCAGTGAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATTGCTGGTGTTGCACGAATGATTGAACGCCTTGATCTTAAACGGCCCTCATCTCCTCTCATCCCTGTAAAAGGGAAGTCTGTCCAAGAGAATAATAATAATGTTATTGAGCAGTTAAATAGTGAAGAGAGTGGAGCTTTAGTTGGCGATGTTACCTCAAATGCCTCCTCACTTGTTGGAGTGGAAATTCCTCCATCTGTTTAG 1122 0.4474 MENFISSSSSPLPLTMSHISTPSSSAAFDDASEDACSICLEPFGTDDPATITSCKHEYHLHCILEWSQRSKECPICWQLLILKDPASQELLTAVEAEKCLSSRTVHSHAFDNSRSPLERLNNDHQDDSCSDDSDFDEQLMQHIVAAASRARYICRRERQRSPGAGPSEVLVFNTSMHASGMQPTLTTSPSGGTSPTFGVPSAAHNQPPTSAFSSVGMVATDTSSESDMPSKPRVVYSQPSPESARKLNTSEMFSFPESIKSKLSAASARCKESISKNTRGLKEKLIARNASVKELSKGVQREMNAGIAGVARMIERLDLKRPSSPLIPVKGKSVQENNNNVIEQLNSEESGALVGDVTSNASSLVGVEIPPSV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02887 373 Pfam Ring finger domain 35 76 IPR001841 -
Cca11g02887 373 MobiDBLite consensus disorder prediction 113 133 - -
Cca11g02887 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 362 - -
Cca11g02887 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 90 IPR013083 -
Cca11g02887 373 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Cca11g02887 373 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 362 - -
Cca11g02887 373 SUPERFAMILY RING/U-box 29 83 - -
Cca11g02887 373 MobiDBLite consensus disorder prediction 179 243 - -
Cca11g02887 373 SMART ring_2 36 76 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02887 Cca-Chr11 56232585 56235580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02887 30 84 C3H Transcription Factor Family AT4G00335 45.455 4.25e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02887 K19043 - gmx:100785684 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02887 11 56232585 56235580 Cca11g02887 11 56232585 56235580 ECH