Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02875 ATGACCACCTCCGCGACTACGGAACAATTCGACGAATGCATGAAGAAACAAGTACAAGTAACGGAACAGCTTTTACGTGTACTTAAATCCTACAAAGAGGACAATATTCCTCACAAAATCGACGAGGGTCTCTATTTGGGTTCGATTGCCTCTGCATTTAACAAGCTTCATTTGAAAAACCATAATATTACTCACATTTTGACTGTCGCTTCTAGAATAAAACCTCCACATCCTGCGGATTTTGTCTATAAACTTATCAACGTTGTTGACAAAAATCATGAAGACTTAAAACAACACTTCAATGAGTGTTTTGATTTTATCGATGAAGCCAAAAGACTTGGTGGAGGTGTTTTGGTTCACTGTTTTGCTGGAAAATCAAGGAGTGTGACTGTAGTTATAGCATATCTGATGAAGACTCGTGGAATGAGCTTTAATGAAGCTTGGCAACATGTAAGGACCATAAGACCAGCAGCATTACCCAATGCGGGTTTCATTCTTCAACTGATGGACTTTGAAATGTCTCTGCAAGAGCAGCAAGAGAGTGGAAGAGACAGACAAGAATGA 564 0.3954 MTTSATTEQFDECMKKQVQVTEQLLRVLKSYKEDNIPHKIDEGLYLGSIASAFNKLHLKNHNITHILTVASRIKPPHPADFVYKLINVVDKNHEDLKQHFNECFDFIDEAKRLGGGVLVHCFAGKSRSVTVVIAYLMKTRGMSFNEAWQHVRTIRPAALPNAGFILQLMDFEMSLQEQQESGRDRQE 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02875 187 PANTHER BNAA01G23680D PROTEIN 12 178 - -
Cca11g02875 187 SMART dsp_5 36 174 IPR020422 GO:0006470|GO:0008138
Cca11g02875 187 Pfam Dual specificity phosphatase, catalytic domain 44 172 IPR000340 GO:0008138|GO:0016311
Cca11g02875 187 Gene3D Protein tyrosine phosphatase superfamily 28 186 IPR029021 -
Cca11g02875 187 ProSiteProfiles Dual specificity protein phosphatase domain profile. 36 177 IPR020422 GO:0006470|GO:0008138
Cca11g02875 187 SMART ptp_7 60 174 IPR003595 -
Cca11g02875 187 CDD DSP 37 170 - -
Cca11g02875 187 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 178 - -
Cca11g02875 187 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 35 178 IPR029021 -
Cca11g02875 187 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 98 159 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02875 Cca-Chr11 56161399 56165441 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02875 39 176 Protein tyrosine phosphatase (PTP) family AT3G06110 57.971 9.45e-56 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02875 - - gmx:100306342 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02875 11 56161399 56165441 Cca11g02875 11 56161399 56165441 ECH