Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02873 ATGGCCAAAGAAGAAGGATGTATGTTCAGTCCACTATTTCCGGAGGTGTTTGAGCCAATTACATTTACTTTTGAAAAAGGAGTTGGACAGAAATTTTGTCAACCTTCAGGAACAGGTATTGATCTAGGTTTCTTCGAGTTGGATGATCTTTCTAGGCCTTTTTCACCCGAAGATGATGAATTTCCCCTTGTCATATGTGCTGAAACAAGTAGTAATTATGCACTAGATGCAACCCCTCACATGCAAATAACTCAAGCTGTCTTAGAGAAAAGCAATGATATTGGCCCTTTCAACGTAAAAGTAGTTAGACAGCTTCTGTGGATTAATGATGTTTGTTATGAGCTGAAAGAGTTATATGGAGCGGCAACAGATTTTTATGATGATAATGATTCTGAGGAGGAGTGTGTGTGTGCTATATGCATGACGGAATCGAACGACACTGCTATCTTGCCCTGCAGACATATGGTATCATATCTTGTCAAACCAACTTAA 492 0.3923 MAKEEGCMFSPLFPEVFEPITFTFEKGVGQKFCQPSGTGIDLGFFELDDLSRPFSPEDDEFPLVICAETSSNYALDATPHMQITQAVLEKSNDIGPFNVKVVRQLLWINDVCYELKELYGAATDFYDDNDSEEECVCAICMTESNDTAILPCRHMVSYLVKPT 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02873 163 PANTHER MAHOGUNIN 3 156 IPR045194 GO:0061630
Cca11g02873 163 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 3 156 - -
Cca11g02873 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 158 IPR013083 -
Cca11g02873 163 SUPERFAMILY RING/U-box 126 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02873 Cca-Chr11 56112527 56113018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02873 2 155 C3H Transcription Factor Family AT3G06140 56.790 4.31e-51 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02873 - - gmx:102665712 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02873 11 56112527 56113018 Cca11g02873 11 56112527 56113018 ECH