Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02868 atgatgaagCTGATGTTTTCGGTATCAGCGTTGTGCAAGCCGGTGCCAATGGAGCCCCTATCCCTATTCGGGCAGCGGAGGAAGGAGAAGGTGGTGGTGATCATGGGCGCAACGGGAACGGGGAAGTCAAAGCTGGCCATTGACCTGGCCACGCAGTTCCCACCGGCGGAGATAGTGAACTCGGACAAAATGCAAGTGTACCAAGGTTTGGACATAACGACGAACAAGGTAATGAACGAAGAGTGCCGAGGGGTCCCACATCATCTGCTAGGCACGGTCCCTCCGAACATGAATTTCAGCGCCAAGGAGTTCTGCGACCACGCCAGCCTCGCCGTTGGCTCCATCTTGGGAAGGGACGCGTTACCCATCATAGCGGGTGGGTCCAACTCGTTCCTGGACGCCTTGGTGAACCACCACCCAGAGTTTCGGTTGCGGTACCAGTGTTTGTTCCTCTGGGTCCACGTCTCCCTCCCCGTCCTCCACTCCTCCCTCCAAACACGTGTCGACCGCATGATCCACGCCGGCCAGCTCCACGAGGTTCGACACGTTTTCCAACGCAACGACCGCGACTACACGCGCGGGATAAGAAGGGCCATTGGCGTCCCCGAGTTTCATCGTTTCTTTGAGGCCGAGGCTGACGGCGCCGACGAGAGGACCAAGAAGATGCTTCTGGAGGCTGCCATTAATGACATCAAAGCCAACAACTGCAACCTCGCCAACCGACAGGTCGACAAGATTCTGCGCCTCTACGGGATGTGGAAACGGAACATGCACCGCCTCGACGCCACCGAGGTTTTCCTCAAGTCCTCTCGCCAGGAGGCCGACCAGGCCTGGCAGGATCACGTCCTCTCCAAGTCCCGAAGGATTCTCCACAACTTTCTCTACGAGGACACGCATCTTCCCGCCGGGATTTCCTCCGTTATCGCCTCTTCTCCGCCGGCTATGgccgccgccaccgccgccgcAACTCACTAG 975 0.5641 MMKLMFSVSALCKPVPMEPLSLFGQRRKEKVVVIMGATGTGKSKLAIDLATQFPPAEIVNSDKMQVYQGLDITTNKVMNEECRGVPHHLLGTVPPNMNFSAKEFCDHASLAVGSILGRDALPIIAGGSNSFLDALVNHHPEFRLRYQCLFLWVHVSLPVLHSSLQTRVDRMIHAGQLHEVRHVFQRNDRDYTRGIRRAIGVPEFHRFFEAEADGADERTKKMLLEAAINDIKANNCNLANRQVDKILRLYGMWKRNMHRLDATEVFLKSSRQEADQAWQDHVLSKSRRILHNFLYEDTHLPAGISSVIASSPPAMAAATAAATH 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02868 324 Pfam IPP transferase 65 139 - -
Cca11g02868 324 Pfam IPP transferase 144 243 - -
Cca11g02868 324 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 157 257 - -
Cca11g02868 324 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 21 299 IPR039657 -
Cca11g02868 324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 142 IPR027417 -
Cca11g02868 324 Gene3D - 28 294 IPR027417 -
Cca11g02868 324 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 21 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02868 Cca-Chr11 56050182 56051979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02868 145 298 C2H2 Transcription Factor Family AT2G27760 28.333 3.86e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02868 K10760 - gmx:100782474 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02868 11 56050182 56051979 Cca11g02868 11 56050182 56051979 ECH
Cca11g02868 11 56050182 56051979 Cca08g02141 08 54613988 54615767 PCT