Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02867 ATGGCAAAGGCAAAGACACAGCAAGTACTAACAATGCCTACACGTCTACCTCAATATGTATCGCTTCGCCGGGTCGAAATTTCGAATCCCTCGATGTGGACCACAAAATGCGCCACCATTCCTTCACTTTCAATTTCTGCCTCTGCTCCTCTGCGCTACGCGTCGTTTCGCTGCAGCTCCACCTCCACCAATTTGCCCTCTTCACCCAAAATCTTCGTTAAAGGACTTCCTCTCTCAACCTCCGAAGGACGCTTGATGAAGGTGTTTTCAGAGTTTGGTGAAGTTACTCTTGTCCAGCTTCCAATAGATAAAGAATCAAGTCAGTCTTTAGGATTTGCATTTATTTCGTTTGCCAAGGAAGAGTCTGCACAATTGGCTGTGCAAGAGATGAATGGAAAGTTTTTTGATGGCAGATTTCTGCTGAATTTAAAAGCTTATTTTTCAGGTAGTAGGAGGCATTATGATGTTAGAATTGGGATGAGAAATCCATGGAACAGTAACATAATTAGAAGAAGAAACATTCACTTTCATCCTCCATACCCTTACCCTTGCTATTGCCTTTCACCGCCACAACCACAACCCACAACCAACCCTCCTCTTCTGCTTCATCGTCGCTGGCCTTATGCAACTGGAATTCCCGTTTTGCCCCCCCCCAATGCCAATGCTCCTAAGAATATAAACAACACTGTCAATTTGCACAAACACACTCTCACCCTCCAACTCGATCCTAACAATCCACATCACCACTTGATTTCCTTTCATTTCGATGCCCTCTATGATGGCAGCTTTACAATCTTCTACATGGCCAAAGAAGAAGGATGTATGTTCAGTCCACTATTTCCGGAGGTGTTTGAGCCAATTACATTTACTTTTGAAAAAGGAGTTGGACAGAAATTTTGTCAGCCTTCAGGAACAGGCATTGATCTAGGTTTCTTCGAGTTGGATGATCTTTCTAGGTCTTTTTCACCCGAAGATGATGAATTTCCCCTTGTCATATGTGCTGAAATAAGTAGTAATTATGCACTAGATGCAACCCCTCACATGCAAATAACTCAAGCTATCTTAGAGAAAAGTAATGATATTGGTCCTTTCAACGTAAAAGTAGTTAGACAGCTTCTGTGGATTAATAATGTTTGTTATGAGCTGAAAGAGTTATATGGAACGGCAACAGATTTTGATGATGATAATGATTCTGAGGAGGAGTGTGTGTGTGTTATATGCATGATGGAACCCAAGGACACTGCTATCTTGCCCTGCAGACATATGTGTATGTGCAGTGAGTGTGCCAAAACTCTACAGTCTCAATCAAATAAATGCCCTATATGCCGTCAACCAATTCAAGAACTTATAGAGATCAAGATAAACAATAACAATCAATGA 1380 0.4167 MAKAKTQQVLTMPTRLPQYVSLRRVEISNPSMWTTKCATIPSLSISASAPLRYASFRCSSTSTNLPSSPKIFVKGLPLSTSEGRLMKVFSEFGEVTLVQLPIDKESSQSLGFAFISFAKEESAQLAVQEMNGKFFDGRFLLNLKAYFSGSRRHYDVRIGMRNPWNSNIIRRRNIHFHPPYPYPCYCLSPPQPQPTTNPPLLLHRRWPYATGIPVLPPPNANAPKNINNTVNLHKHTLTLQLDPNNPHHHLISFHFDALYDGSFTIFYMAKEEGCMFSPLFPEVFEPITFTFEKGVGQKFCQPSGTGIDLGFFELDDLSRSFSPEDDEFPLVICAEISSNYALDATPHMQITQAILEKSNDIGPFNVKVVRQLLWINNVCYELKELYGTATDFDDDNDSEEECVCVICMMEPKDTAILPCRHMCMCSECAKTLQSQSNKCPICRQPIQELIEIKINNNNQ 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02867 459 Pfam Zinc finger, C3HC4 type (RING finger) 401 448 - -
Cca11g02867 459 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 183 458 - -
Cca11g02867 459 ProSiteProfiles Zinc finger RING-type profile. 404 443 IPR001841 -
Cca11g02867 459 SUPERFAMILY RING/U-box 396 449 - -
Cca11g02867 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
Cca11g02867 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 140 IPR000504 GO:0003723
Cca11g02867 459 PANTHER MAHOGUNIN 183 458 IPR045194 GO:0061630
Cca11g02867 459 SMART rrm1_1 70 144 IPR000504 GO:0003723
Cca11g02867 459 SUPERFAMILY RNA-binding domain, RBD 61 140 IPR035979 GO:0003676
Cca11g02867 459 Gene3D - 57 164 IPR012677 -
Cca11g02867 459 SMART ring_2 404 442 IPR001841 -
Cca11g02867 459 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 404 443 IPR045195 -
Cca11g02867 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 387 454 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02867 Cca-Chr11 56028222 56037484 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02867 175 459 C3H Transcription Factor Family AT3G06140 51.701 2.47e-88 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02867 - - gmx:102665712 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02867 11 56028222 56037484 Cca11g02867 11 56028222 56037484 ECH