Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02859 ATGGTTAGGGTTAGTGTGTTGAATGATGCTCTCAAGAGCATGTACAATGCTGAGAAAAGAGGGAAGCGTCAAGTTATGATTAGGCCATCCTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCAAAAGCATGGATACATTGGAGAGTTTGAATATGTCGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAATGGCAGATTGAACAAGTGTGGGGTTATTAGTCCGCGTTTTGATGTGGGTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTTCCCTCAAGACAGTTTGGGTATATTGTATTGACTACCTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTCGGTGCGTCCAGTAATATCAAGCATAATAAGAGCTGTTTTATGGTTCTTTATTTTGTTTGCAAAATCAAAGGAAAAAGGAGAAGGATGGAGGAGATGCTTCTGCCGTGGGAATTGATAATTGAAATCCTGTTGAGGTTGCCGGTGAAGTCTCTTATCCATTTCAAAACAGTGTGTAAGTCATGGCTTACTCTCATCTCTGATCCCCACTTTGCAAGCTCACATTTTGAACTGGCTGCTGCATGCACAGAGAGACTTGTCTTCGTATCGCTAGCCTTATCGTTACCTTCTGTTCCAGAATTCCGAACCATAGACTTCAATGCACATCTTTTGGATGATTCTGCTTCTCCTACATTTAAAAACATGTTTTATCGTCCCAGACCCTATGATGATATTGAATTCCTAGGTTCCTGCAGAGGGTTTTTGCTTTTGGAGTTGAATGGTATTTTCTGCGTGTGGAATCCATCTACAGGGGCCTACAAATTTGTACATCCGTCACCTGTTGTTACGGGTCGTCGCAAGTTTTTTGCATTTCGTGGTTTTGGATATGACCCATCAACAGATGACTATTTGGTGGTTCAGGTGTACCACAACAAACTCTCGGGTGATTATGCAACCCTCGTGGACTACTTTTCGATCAAAACTAATTCATGGAAAGAAATTGGTGCTACCCCTTTGAATTATAGGCAATGCTTTTCTTATAGGAATAGTACAGCCGGGTGCTTCTTGAATGGTGCTATTCATTGGTTGGCTGTTTGTTATGATGCATCAATCCATGTTATTGCAGCCTTTGATTTGACGGAAAGGAGTTTGTCACATATACCTCTGCCTCTTAATTTTGAGCACCACGACTTTAATCCAAGTTTTTTGAGGATACTTGGAGGATCCCTCAACCTGTGCTCTCTGGGAAGAGACTCATTGGAAATATGGATGATGAAAGAATACAAAGTGAAGTCATCGTGGACTAAGACTGTTGTTATGCCTATCGATGCCCTTCCAACTGGGTTGTTTTTTCCAATATGCTATACAAAAAGTGGTGATATTGTTGGAACAAATGCCGGAGCTAGATTGACAAAATGTGATGTCAATGGAGTACTGCTAGAGCATCGATTCTATCGTACTGGTTCATCTGGATCCAAGGTGGCTGTGTATAAAGAGTCTCTACTTTCACTCCCTTGTGATACCAAGCAAGCTGGAGAAGATGATTAA 1569 0.4181 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGASSNIKHNKSCFMVLYFVCKIKGKRRRMEEMLLPWELIIEILLRLPVKSLIHFKTVCKSWLTLISDPHFASSHFELAAACTERLVFVSLALSLPSVPEFRTIDFNAHLLDDSASPTFKNMFYRPRPYDDIEFLGSCRGFLLLELNGIFCVWNPSTGAYKFVHPSPVVTGRRKFFAFRGFGYDPSTDDYLVVQVYHNKLSGDYATLVDYFSIKTNSWKEIGATPLNYRQCFSYRNSTAGCFLNGAIHWLAVCYDASIHVIAAFDLTERSLSHIPLPLNFEHHDFNPSFLRILGGSLNLCSLGRDSLEIWMMKEYKVKSSWTKTVVMPIDALPTGLFFPICYTKSGDIVGTNAGARLTKCDVNGVLLEHRFYRTGSSGSKVAVYKESLLSLPCDTKQAGEDD 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02859 522 Gene3D - 70 124 - -
Cca11g02859 522 Gene3D - 154 191 - -
Cca11g02859 522 PANTHER F-BOX PROTEIN INTERACTION DOMAIN PROTEIN 153 511 - -
Cca11g02859 522 Pfam F-box associated 361 453 IPR006527 -
Cca11g02859 522 SMART fbox_2 155 194 IPR001810 GO:0005515
Cca11g02859 522 Pfam Ribosomal protein S8 7 122 IPR000630 GO:0003735|GO:0005840|GO:0006412
Cca11g02859 522 ProSitePatterns Ribosomal protein S8 signature. 100 117 IPR000630 GO:0003735|GO:0005840|GO:0006412
Cca11g02859 522 SUPERFAMILY F-box domain 154 201 IPR036047 GO:0005515
Cca11g02859 522 TIGRFAM F_box_assoc_1: F-box protein interaction domain 257 467 IPR017451 -
Cca11g02859 522 Gene3D - 1 69 - -
Cca11g02859 522 Pfam F-box domain 155 190 IPR001810 GO:0005515
Cca11g02859 522 PANTHER OS02G0783600 PROTEIN 153 511 - -
Cca11g02859 522 SUPERFAMILY Ribosomal protein S8 4 122 IPR035987 GO:0003735|GO:0005840|GO:0006412
Cca11g02859 522 ProSiteProfiles F-box domain profile. 149 199 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02859 Cca-Chr11 55954958 55962377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02859 1 123 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 96.748 5.92e-82 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02859 K02957 - ccaj:109809426 756.133