Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02858 ATGCCACATGATCAGAGAAAAAAGTCATCTATAGATGTAGACTTTTTTACAGAATATGGCGAAGGGAGTAGATACAGAATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTTGTTTGCTCTGCATATGATACACACACCGGTGAAAAGGTTGCAATAAAGAAAATCAATGACATATTTGAACATGTTTCTGATGCCACCCGCATTCTTCGTGAGATCAAGCTTCTTAGACTCTTACGCCATCCTGATATTGTGGAGATCAAGCATATTTTGTTGCCTCCTTCTAGAAGGGAATTCAAAGACATATATGTTGTTTTTGAACTAATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATTTAACTCCAGAGCATTACCAGTTTTTTCTCTATCAGCTTCTTCGAGGCTTGAAGTATATACACACAGCAAATGTTTTTCACCGAGATCTAAAGCCGAAAAATATTTTAGCAAATGCTGACTGCAAGCTGAAGATTTGTGACTTTGGTCTTGCTAGAGTGGCTTTCAATGATACGCCAACTGCTATATTTTGGACAGATTACGTTGCAACAAGGTGGTATAGAGCTCCTGAATTGTGTGGATCCTTTTTCTCCAAGTATACCCCAGCTATAGATATATGGAGCATTGGCTGCATTTTTGCAGAACTTTTAACTGGAAAGCCTCTTTTCCCTGGGAAGAATGTTGTCCATCAATTGGACATCATGACTGATTTTCTTGGAACACCATCACCTGAAGCCATTGCTAGGATACGAAATGAGAAAGCTCGGAGGTACTTGAGCAGCATGCGTAAGAAGAAGCCAGTTCCTTTCTCCCAAAAGTTTCCTAATGTAGATCCGCTTGCTCTTCGTGTATTAGAAAGAATGCTGGCATTTGAACCTAAGGATCGACCTACTGCTGAAGAGGCTCTAGCAGATCCATATTTTAAAGGCTTGGCCAAGGTTGAGAGAGAGCCTTCTGCTCAGCCAGTTACAAAGATGGAATTTGAATTTGAGAGATGTAGGATAACAAAGGAAGATGTGAGAGAGCTTATATACCGAGAGACTTTGGAGTACCATCCGAAGATGTTAAAAGAACATCTAGAGGGAGAAGAGCCAACAGGATTCATGTATCCAAGGTATTATTGTCCAAACCTGCACCAAAATTTCTGTTTTACTTATTCTTTTGCATGA 1194 0.397 MPHDQRKKSSIDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDIMTDFLGTPSPEAIARIRNEKARRYLSSMRKKKPVPFSQKFPNVDPLALRVLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERCRITKEDVRELIYRETLEYHPKMLKEHLEGEEPTGFMYPRYYCPNLHQNFCFTYSFA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02858 397 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02858 397 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cca11g02858 397 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Cca11g02858 397 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Cca11g02858 397 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 9 371 - -
Cca11g02858 397 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02858 397 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Cca11g02858 397 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02858 397 CDD STKc_TDY_MAPK 24 361 - -
Cca11g02858 397 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 371 - -
Cca11g02858 397 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02858 Cca-Chr11 55943390 55950496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02858 1 379 MAP Kinase Gene Family AT5G19010 93.140 0.0 740
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Cca11g02858 Pkinase 1.5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02858 - K04371 gmx:100799442 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02858 11 55943390 55950496 Cca11g02858 11 55943390 55950496 ECH
Cca11g02858 11 55943390 55950496 Cca08g02154 08 54794852 54802098 PCT