Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02843 ATGGGTTGTGTCCATGGCAAGTGTTGCTGTGGCCACCGTTCTTCATCAGATGATGATTCCAGGGATTACCGAGAACATGGTTTCATTCATGGCCACAGGAAGAACGTAATTGCCCAGAGGTCATTGAAGCGTGTTCCTGTTCCTTCCCACAACTTCATTCTCGAATATACCTATCTCACTCAGCGGGGGTACTACCCTGACTCGCCTGATAAAGAAAACCAAGATAGTTTCTGCATTAGTACACAGCTCCAAGGTAACCCCAGTGTCCATTTCTTTGGTGTCTATGATGGGCATGGCCAATTCGGTAGCCAGTGTTCAAACTTTGTTAAGGATAGGTTGGCAGATAAGTTATCAAATGACCCTGCATTGTTGGACGACCCTGTTCAAGCTTACAATTCTGCATTCTTGGCAACGAATCAAGAATTGCGCACAAGTGAGATTGATGATTCTATGAGTGGCACCACCGCGATTACGGTGCTTGTTGTTGGTGACACCCTTTATGTCGCTAATGTTGGTGATTCGAGAGCTGTGCTGGCTGTTAAGGATGGGAATCGCATTGTTGCTGAGGACTTGTCCTCTGATCAGACACCGTTTAGGAGGGATGAATACGAGAGAGTGAAACTTTGTGGGGCGAGGGTGTTGAGTGTTGATCAAGTGGAAGGGCTCAAGGATCCGGATGTTCAGCATTGGGGTGATGAAGAGAGTCGGGGTGGCGATCCTCCAAGATTGTGGGTTCCTAATGGGATGTATCCTGGAACTGCATTTACAAGGAGTATAGGGGATAGTTTGGCGGAGACTATTGGTGTCGTTGCTATTCCTGAGGTGAAAACTGTTCAGCTTACACCTAATCATCTTTTCTTTGTGGTTGCAAGTGATGGCATATTTGAATTCCTGACAAGCAAAACTGTTGTTGATATGGCTGCAAGCTATACAAATCCTCAAGATGCATGTACAGCTATTGCAGAAGAATCGTATAAACTATGGTTGGAACTTGAGAACAGAACAGATGATATAACAATTATCATTGTTCATATCAAAGGTCTCTCTAATTCAGGTACATCTGGAGTTGGATCAAATGAGATCAATGTTGGACCGGTTACTCTGATTTGCAGTCCTGTCAGCACGTGGCTTCAATGA 1137 0.4494 MGCVHGKCCCGHRSSSDDDSRDYREHGFIHGHRKNVIAQRSLKRVPVPSHNFILEYTYLTQRGYYPDSPDKENQDSFCISTQLQGNPSVHFFGVYDGHGQFGSQCSNFVKDRLADKLSNDPALLDDPVQAYNSAFLATNQELRTSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGLKDPDVQHWGDEESRGGDPPRLWVPNGMYPGTAFTRSIGDSLAETIGVVAIPEVKTVQLTPNHLFFVVASDGIFEFLTSKTVVDMAASYTNPQDACTAIAEESYKLWLELENRTDDITIIIVHIKGLSNSGTSGVGSNEINVGPVTLICSPVSTWLQ 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02843 378 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 34 353 - -
Cca11g02843 378 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Cca11g02843 378 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Cca11g02843 378 Pfam Protein phosphatase 2C 76 324 IPR001932 -
Cca11g02843 378 CDD PP2Cc 71 345 IPR001932 -
Cca11g02843 378 SMART PP2C_4 47 343 IPR001932 -
Cca11g02843 378 SUPERFAMILY PP2C-like 47 347 IPR036457 -
Cca11g02843 378 Gene3D - 52 347 IPR036457 -
Cca11g02843 378 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 34 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02843 Cca-Chr11 55796739 55799045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02843 1 350 PP2C-type Phosphatase Gene Family AT3G06270 69.602 1.87e-177 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02843 - - gmx:100797866 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02843 11 55796739 55799045 Cca11g02843 11 55796739 55799045 ECH
Cca11g02843 11 55796739 55799045 Cca08g02175 08 55005830 55009774 PCT