Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02829 ATGGGAAGGTACCGAAGCCGGAGCAGAAGCTATAGCCCTCGCCGGCGAAGCAGGACCCCACCGCGTGGACGCAAGCGCTATGTCGATGATCGCTACGCTGACAGCAGGTCTTACAGAGACCGCCGCTCACCCCTTCCCTCCGGCTTGCTTGTTCGTAATCTCCCCCTTGACGCTAGgcctgaggatcttaggattccatttgagcgctatggtcctgtgaaggatgtttatcttcctaaaaattactacactggtgagccccgtggttttggatttgtaaaatatcgatatggtgaagatgcggctgaggcaaagcaacatcttaatcatactatcattggtggccgtgaaattagaattgtttttgccgaggaaaataggaaaactcctcaagaaatgcgtGTTAATTCTCGAGGAAGTGGTCGATAtggaggtggtggtggtggtAGAAGGAGGAATCGCTCTAGATCCCCACGGCGCCGATATCATTCCTACTCTCGGTCTCCGTCACCGGCTCGGGATGATTCAAGGGATGACAGGGGTAGGGATGATTATTATTCTCCTGAGCGTTCAAGATCTTATTCTAGGTCTCCCTCTCCTAGTGGTGGGAAGGACTACAGGAAGTCCCCACATCCCAGGGAGAATGGCCGGAGTCCTAATGACAAGAAGGATCAGACACCTAGCAGATCCCCGAGTCCTAGGGGTAATGATCGCAGTCCTTCAAGGTCTCGTTCACGATCATACAGTCCACGCTGA 756 0.373 MGRYRSRSRSYSPRRRSRTPPRGRKRYVDDRYADSRSYRDRRSPLPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHTIIGGREIRIVFAEENRKTPQEMRVNSRGSGRYGGGGGGRRRNRSRSPRRRYHSYSRSPSPARDDSRDDRGRDDYYSPERSRSYSRSPSPSGGKDYRKSPHPRENGRSPNDKKDQTPSRSPSPRGNDRSPSRSRSRSYSPR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02829 251 MobiDBLite consensus disorder prediction 23 41 - -
Cca11g02829 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Cca11g02829 251 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 251 - -
Cca11g02829 251 MobiDBLite consensus disorder prediction 124 251 - -
Cca11g02829 251 MobiDBLite consensus disorder prediction 167 190 - -
Cca11g02829 251 SUPERFAMILY RNA-binding domain, RBD 49 154 IPR035979 GO:0003676
Cca11g02829 251 MobiDBLite consensus disorder prediction 1 45 - -
Cca11g02829 251 SMART rrm1_1 48 121 IPR000504 GO:0003723
Cca11g02829 251 MobiDBLite consensus disorder prediction 229 251 - -
Cca11g02829 251 MobiDBLite consensus disorder prediction 1 22 - -
Cca11g02829 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 119 IPR000504 GO:0003723
Cca11g02829 251 MobiDBLite consensus disorder prediction 206 228 - -
Cca11g02829 251 Gene3D - 22 165 IPR012677 -
Cca11g02829 251 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 251 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02829 51 109 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 1.78e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02829 K12900 - gmx:100788749 265.003