Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02818 ATGGCCGTTGGAGTATTGTACGACAAACTAACCACAGTCATGACCTCGGATCATGCTTCCGTCGTCTCATTGAACCTCTTTGTTGCTCTTCTATGCGCCTGCATCATCCTCGGTCACTTGTTGGAAGAGAACCGATGGATCAATGAATCCATCACTGCCCTTCTCATTGGTCTCTTCACTGGGGTCTTTATATTGCTTACTACTGGAGGAAAAAGCTCTCATATACTACTCTTCAGTGAAGATCTTTTCTTTATTTACCTTCTTCCACCCATCATTTTCAATGCTGGGTTTCAGGTGAAGAAGAAACAATTTTTCCGCAATTTTATAACTATAATGCTCTTTGGTGCAGTTGGTACTTTGATATCATTCTGCATCATATCACTAGGTGCCATACACTTTTTCCAGAAACTGGACATTGGTTCCCTCAAGATTGGAGATTATCTAGCAATTGGAGCAATATTTTCAGCAACGGATTCTGTTTGCACTTTGCAGGTTCTTAATCAGGATGAGACTCCTTTACTGTATAGCCTGGTCTTTGGGGAGGGGGTAGTAAATGATGCTACCTCCGTAGTTCTCTTCAAAGCAATTCAGAATTTTGACCTCTCTCACATTGACTTAAACACTGCCTTACAGTTAATAGGAAATTTTTTATATTTATTCATTGCAAGCACTGTGCTGGGAGTCTTTGCTGGATTGCTTAGTGCATACATTATTAAGAAGCTATATTTTGGCAAGTTGATAAGGCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCATATATGCTATCTGAACTCTTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTAACGGAAAGTTCACGAGTGACAACCAAGCATGTTTTTGCCACTATGTCATTCATTGCTGAAATCTTCATCTTCCTCTATGTGGGGATGGATGCATTAGACATAGAGAAGTGGCGATTTGTAAGTCAAAGTCCAAGAAAATCTATTGGGGTCAGTTCGTTGCTGTTGGCACTTATCCTGGTAGGAAGAGCTGCATTTGTTTTCCCCTTGTCCTTCTTATCCAACTTGCTTAAGAAGTCTCAATCTGAGAAAATTGAGTTAAAGCAACAAGTAACAATTTGGTGGGCTGGTCTCATGCGTGGAGCTGTTTCTATCGCACTTGCTTACAATCAGTTCACCAGGCTGGGCCATACTAAATTGCGAGAGAATGCCATCATGATCACCAGTACCATTACTGTTGTACTCTTCAGCACATTGGTGTTTGGGTTGATGACAAAGCCACTTGTGAGGCTCTTGCTTCCTTCCTCTAAACACGTAGTCAGCTTGCCGACCCCACCATCGACACCAAAATCATTCACTGTGCCACTTCTTGGCAGTGGAGAGGATTCATGGGCCAATGGTGGCACCCATAATGGGCCCCCACCAAGCACCTTGATGATGCTCCTAAGCTGCATTCCAACTCGTGGGGTACACCACTATTGGCGCAAATTTGATGATTCTGTCATGCGACCCGTCTTTGGTGGACGAGGTTTTGTACCCTACGTTCCCGGGTCACCCCTTGAACAAAGTGTTCATCAGTGGCATTGCACTTAG 1635 0.4324 MAVGVLYDKLTTVMTSDHASVVSLNLFVALLCACIILGHLLEENRWINESITALLIGLFTGVFILLTTGGKSSHILLFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFITIMLFGAVGTLISFCIISLGAIHFFQKLDIGSLKIGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQNFDLSHIDLNTALQLIGNFLYLFIASTVLGVFAGLLSAYIIKKLYFGKLIRHSTDREVALMVLMAYLSYMLSELFSLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHVFATMSFIAEIFIFLYVGMDALDIEKWRFVSQSPRKSIGVSSLLLALILVGRAAFVFPLSFLSNLLKKSQSEKIELKQQVTIWWAGLMRGAVSIALAYNQFTRLGHTKLRENAIMITSTITVVLFSTLVFGLMTKPLVRLLLPSSKHVVSLPTPPSTPKSFTVPLLGSGEDSWANGGTHNGPPPSTLMMLLSCIPTRGVHHYWRKFDDSVMRPVFGGRGFVPYVPGSPLEQSVHQWHCT 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02818 544 PRINTS Na+/H+ exchanger signature 82 93 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cca11g02818 544 PRINTS Na+/H+ exchanger signature 151 161 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cca11g02818 544 PRINTS Na+/H+ exchanger signature 96 110 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cca11g02818 544 PRINTS Na+/H+ exchanger signature 111 119 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cca11g02818 544 PANTHER SODIUM/HYDROGEN EXCHANGER 3 7 542 - -
Cca11g02818 544 Pfam Sodium/hydrogen exchanger family 26 444 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cca11g02818 544 Coils Coil 364 384 - -
Cca11g02818 544 Gene3D - 143 195 - -
Cca11g02818 544 PANTHER SODIUM/HYDROGEN EXCHANGER 7 542 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02818 Cca-Chr11 55585459 55589323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02818 6 540 Antiporters AT3G05030 74.444 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02818 - - ccaj:109808409 1073.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02818 11 55585459 55589323 Cca11g02818 11 55585459 55589323 ECH