Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02817 ATGGAGGATGGGTTGGAGCATAGTTGGTGGGCCAACATGCCTCACGAGCTTCTCAGAGAGGTCCTCCGAAGAATTGAGTCGTCGGAGGCTACGTGGCCGTCACGTAGGACCGTCGTGGCTTGTGCCGGAGTGTGCCGCGCGTGGAGGCTCGTCGTCATGGAGATAGTCAACCCACCTCAACTCTCTTCCAACATAACCTTCCCCATCTCTCTCAAACAGCCTGGTCCAAGGGAGCATCTACTTCAGTGCTTCATTAGGCGTAACAGTGGCTCCGCCTCCCAGACATATTATCTGTTTCTCAGTTTATCTAGTGCATTAGCTGATGATGGAAAGTTCCTTCTGGCTGCACGCAAGTTCAGACGCCCTACCTGCACCGATTACATTATCTCCCTAGATGCAGATATGTCTAGGGAAAATAATGCCTATGTTGGGAAATTGAGATCGAATTTTTTGGGAACTAAGTTCACAATCTACGATAGCCAGCTGCCTCGTGCAGTGGCAAAGATCACAAAAGGTTGCCCCACTAAGCTGGTGAGTCACAAAATGGTTTTACCCAGGGTCCATATAGGCAACTATCCAGTTGCTCACATCTCATATGAATTGAACGCAATAGGCTCCAGGGGGCCAAGGAGAATGCATTGTGTCATGGATACCATTCCTGCCTCTGCTATTGAACCAAGAGGGGGAGGCCCTTCCCCCACCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTGCTTCTGCTATTGAACCAGGAGGGGTAGCCCCTTCCCAGACCGAATTTTCTGTTAGTAACATAGATACTTCATTCCCTTCTTTTCAGACAAACTCAATTCGTCTTGAAAACTCCGTATCTGAACACCAGAGTAATAAAAAGGATGATGTGCTAGTGTTGAGAAACAAGCCTGCTAGGTGGCACGAGCAGTTGCAGTGTTGGTGCTTGAACTTTCATGGCAGAGTGACGGTAGCTTCGGTTAAAAACTTTCAGCTGGCTGCTTTTCCAGAAAACGGACATGCTGGACCACAAGAGGATGAGGTCATCCTCCAATTTGGAAAAGTTGGGAAGGACTTGTTTACAATGGATTACCGGTACCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGCAACCACTGTTGCTTGCGAATGA 1410 0.3915 MEDGLEHSWWANMPHELLREVLRRIESSEATWPSRRTVVACAGVCRAWRLVVMEIVNPPQLSSNITFPISLKQPGPREHLLQCFIRRNSGSASQTYYLFLSLSSALADDGKFLLAARKFRRPTCTDYIISLDADMSRENNAYVGKLRSNFLGTKFTIYDSQLPRAVAKITKGCPTKLVSHKMVLPRVHIGNYPVAHISYELNAIGSRGPRRMHCVMDTIPASAIEPRGGGPSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASAIEPGGVAPSQTEFSVSNIDTSFPSFQTNSIRLENSVSEHQSNKKDDVLVLRNKPARWHEQLQCWCLNFHGRVTVASVKNFQLAAFPENGHAGPQEDEVILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFATTVACE 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02817 469 PRINTS Tubby superfamily signature 127 143 IPR000007 -
Cca11g02817 469 PRINTS Tubby superfamily signature 447 469 IPR000007 -
Cca11g02817 469 PRINTS Tubby superfamily signature 426 445 IPR000007 -
Cca11g02817 469 SUPERFAMILY Tubby C-terminal domain-like 59 469 IPR025659 -
Cca11g02817 469 Pfam Tub family 71 225 IPR000007 -
Cca11g02817 469 Pfam Tub family 358 464 IPR000007 -
Cca11g02817 469 Gene3D Tubby Protein; Chain A 338 469 IPR025659 -
Cca11g02817 469 Gene3D Tubby Protein; Chain A 68 234 IPR025659 -
Cca11g02817 469 Pfam F-box domain 10 52 IPR001810 GO:0005515
Cca11g02817 469 PANTHER TUBBY-RELATED 4 236 - -
Cca11g02817 469 PANTHER TUBBY-RELATED 327 469 - -
Cca11g02817 469 MobiDBLite consensus disorder prediction 222 243 - -
Cca11g02817 469 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 4 236 - -
Cca11g02817 469 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 327 469 - -
Cca11g02817 469 ProSitePatterns Tub family signature 1. 399 412 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02817 Cca-Chr11 55574092 55576086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02817 328 469 TUB Transcription Factor Family AT2G47900 66.897 4.62e-57 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Cca11g02817 Tub 4.5e-48 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02817 K19600 - gmx:100794141 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02817 11 55574092 55576086 Cca11g02817 11 55574092 55576086 ECH
Cca11g02817 11 55574092 55576086 Cca08g02204 08 55441565 55457363 PCT