Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02815 ATGGGGTGTGTGTTTGGGAAAGAAGCATCAAAGAGGAAAGAGGAAGTAGATGTTCCAAGAGCAGAAGAGGTTGTGGTTCAGAATGGTGGGAATGTGAAGGAGGGTCGAGAGGAGGAGAAGAGCAAGAGGCCGAAAGGGGAGAGAAGGCGATCTTCGAAGCCGAATCCGAGGTTAAGCAATCCACCTAACCATGTACATGGCGAGCAAGTGGCTGCAGGGTGGCCCTCTTGGCTCTCCAAGGTTGCTGGGGAAGCTATAAATGGATTGGTCCCTAGAAGAGCTGACACTTTTGAGAAGCTTAATAAGATTGGACAAGGTACATATAGCAATGTTTACAAAGCAAAGGATACTATGACAGGGAAAATTGTAGCTCTAAAGAAGGTTCGCTTTGACAATTTAGAGCCCGAGAGTGTGAAATTCATGGCCAGAGAGATTCTCATTCTACGCCATCTGGATCATCCCAATGTTATCAAACTAGAAGGTTTAGTGACTTCAAGGATGTCGTGCAGTTTGTACCTTGTGTTTGAATACATGGATCATGATTTGGCTGGACTTGCTACAAGCCCCACAATTAAGTTCACAGAGTCTCAGGTTAAATGTTACATGCATCAGCTACTTTCTGGACTGGAACACTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGGTCAAACCTTCTTATTGACAGTGAAGGAGTTCTTAGGATTGCTGATTTTGGATTAGCTTCTTTCTTTGATCCCAATCAGAAGCACCCCATGACCAGCAGGGTGGTTACTTTGTGGTATAGACCTCCAGAACTTCTCCTTGGAGCCACTGATTATGGTGTAGGAGTAGACCTATGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGCAAACCTATTATGCCTGGTCGAACTGAGGTGGAGCAGCTACATAAGATATTTAAGCTCTGTGGTTCTCCATCTGATGAATATTGGAAAAAGTCAAAGTTGCCACATGCTACCATTTTTAAGCCCCGACATTCATACAAGCGGTGCATAGCAGAGACATTTAAGAATTTCCCAGCGTCATCCTTGCCACTAATTGAGACCCTTCTTGCAATCGATCCAGCAGAACGTCAAACTGCCACAGCTGCATTGAATAGTGAATTCTTTACAACAAAACCTTATGCCTGTGAACCCTCTAGCCTTCCGAAATATCCTCCCAGCAAGGAGATGGATACAAAGCTACGGGATGAAGAAGCTAGAAGATTGAGAGTTGCTGGCAAAGCTAATGCTGCTGGCGTCAAGAAATCACGTCCACGTGATCGAGGTGGCCGGAGAATTCCCGTTGCAGATGCCAATGCCGAGTTGCAAGCAAATATCGATAAATGGCGATTGGTAACACATGCAAATGCTAAGAGTAAGAGTGAGAAGTTTCCTCCTCCTCATGAAGATGGAGCTCTAGGCTATCCTTTGGGTTCTTCACATCACATGGATCCGATTTTCGATCCTCCTGACATTCCATTTAGTTCCACAAACTTGTCATATCCTAAAGCAGACATCCAAACCTGGTCTGGCCCATTGGTGGAAACTTGTGTGGATGCACCAAGGAGAAAGAAGAACATGGCTGGGGATAGGCACATACAATCAAAGGTGTCAAAGAAGGACTCTTATAGATAG 1650 0.4521 MGCVFGKEASKRKEEVDVPRAEEVVVQNGGNVKEGREEEKSKRPKGERRRSSKPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLVPRRADTFEKLNKIGQGTYSNVYKAKDTMTGKIVALKKVRFDNLEPESVKFMAREILILRHLDHPNVIKLEGLVTSRMSCSLYLVFEYMDHDLAGLATSPTIKFTESQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDSEGVLRIADFGLASFFDPNQKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKSKLPHATIFKPRHSYKRCIAETFKNFPASSLPLIETLLAIDPAERQTATAALNSEFFTTKPYACEPSSLPKYPPSKEMDTKLRDEEARRLRVAGKANAAGVKKSRPRDRGGRRIPVADANAELQANIDKWRLVTHANAKSKSEKFPPPHEDGALGYPLGSSHHMDPIFDPPDIPFSSTNLSYPKADIQTWSGPLVETCVDAPRRKKNMAGDRHIQSKVSKKDSYR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02815 549 Gene3D Phosphorylase Kinase; domain 1 85 179 - -
Cca11g02815 549 MobiDBLite consensus disorder prediction 7 21 - -
Cca11g02815 549 Gene3D Transferase(Phosphotransferase) domain 1 180 420 - -
Cca11g02815 549 MobiDBLite consensus disorder prediction 526 549 - -
Cca11g02815 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Cca11g02815 549 MobiDBLite consensus disorder prediction 462 496 - -
Cca11g02815 549 MobiDBLite consensus disorder prediction 1 68 - -
Cca11g02815 549 ProSiteProfiles Protein kinase domain profile. 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02815 549 PANTHER CELL DIVISION PROTEIN KINASE 24 530 - -
Cca11g02815 549 Pfam Protein kinase domain 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02815 549 MobiDBLite consensus disorder prediction 418 437 - -
Cca11g02815 549 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
Cca11g02815 549 PANTHER CYCLIN-DEPENDENT KINASE 24 530 - -
Cca11g02815 549 SUPERFAMILY Protein kinase-like (PK-like) 92 386 IPR011009 -
Cca11g02815 549 SMART serkin_6 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02815 549 CDD STKc_CDK9_like 97 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02815 Cca-Chr11 55564673 55569005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02815 92 419 Core Cell Cycle Gene Families AT5G10270 52.326 1.16e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca11g02815 Pkinase 8.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02815 K08819 - gmx:100814207 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02815 11 55564673 55569005 Cca11g02815 11 55564673 55569005 ECH
Cca11g02815 11 55564673 55569005 Cca08g02207 08 55477264 55483649 PCT