Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02811 ATGGAAGGGCACACTGAAACAGACTCAACCATGCCACCACTCTCTCAAATCCCACCTTCTTCTTCTTCTCTGCTCGGTCCTTCAATAACCAATGGTGAAAACCCCAGAAAGCGTGTTAGAAGATTGGATGACACCAATTGCGAGAGCCTCAACATGGAACGTGAAAGAAGGTCCAAGATGACTCACATGTTCACTCAGCTTCGAACCACTATCCCCGGTGTCTTTCCTCAGGCAACAAGGGAGGTGATTATAAACGAGACGATTCGGTACATTAAGGAGCTTGAGAAGAAGAAGGAAAGGTTGGAGGAGTTGAAGGAGTCGATGAAATTGAAAGGGGTACAAGGGTTGAGGATTGCATGCGGtaataataataataataacaaCAGGAATTGCTCCATCACGGTTACTGTGTCTGCCAATGTTGTATTCTTTGGCATTCAATCCTTGGCTCGACCCGGTTTGATAACGGTAATTTTGAAGGTGTTTTACAAGTACCAAACTGAGGTTTTGGCTGCCAATGTATCCGTTGATGATGGGAATTTGATATTGGCGATCACGGCGTTGGTGCAAAATGGTGGTGATGGAAACGATGTCGTTGAGAATATTAAAAGAGAAATTATGAGTTTGTAG 630 0.4349 MEGHTETDSTMPPLSQIPPSSSSLLGPSITNGENPRKRVRRLDDTNCESLNMERERRSKMTHMFTQLRTTIPGVFPQATREVIINETIRYIKELEKKKERLEELKESMKLKGVQGLRIACGNNNNNNNRNCSITVTVSANVVFFGIQSLARPGLITVILKVFYKYQTEVLAANVSVDDGNLILAITALVQNGGDGNDVVENIKREIMSL 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02811 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 112 IPR036638 GO:0046983
Cca11g02811 209 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 8 208 - -
Cca11g02811 209 MobiDBLite consensus disorder prediction 1 36 - -
Cca11g02811 209 SMART finulus 50 100 IPR011598 GO:0046983
Cca11g02811 209 MobiDBLite consensus disorder prediction 8 30 - -
Cca11g02811 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Cca11g02811 209 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 8 208 - -
Cca11g02811 209 Gene3D - 48 117 IPR036638 GO:0046983
Cca11g02811 209 Pfam Helix-loop-helix DNA-binding domain 52 95 IPR011598 GO:0046983
Cca11g02811 209 Coils Coil 84 114 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02811 19 102 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 34.409 1.93e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g02811 HLH 1.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02811 - - gmx:102670256 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02811 11 55529914 55530698 Cca11g02811 11 55529914 55530698 ECH