Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02809 ATGGAAGCCGAACGTCTTGATTTTGGGAAGATGGGATATGGGTGCAACCATTACAGGAGAAGATGCAGTATTCGTGCTCCCTGCTGCAACGAGATCTACTCATGCCGTCACTGTCATAACGAAGCAACGACCTTCTTCAACAATCCCTTTGATCGCCACGAACTCGTTCGCCAAGATGTTCAACAAGTTGTTTGTTCGGTTTGTGACACTGAACAGCCTGTTGCTCAAGTTTGCACAAACTGTGGCGTCAGAATGGGAGAATATTTCTGCGACATCTGCAAATTCTTTGATGATGATACAGAAAAAGAAGTGTTTCATTGTGATGATTGTGGGATCTGCAGGGTTGGTGGTCGACATAATTTTTTCCACTGCAAGAAGTGCGGGTCTTGTTATTCAATTGCTCTGCGTGATAAACATGTATGTGTGGAGAACTCCATGAGGCATCACTGTCCCATTTGTTACGAGTACCTTTTCGATTCATTGAAAGACACTATTGTTATGAGATGTGGTCACACAATGCACCATGAATGTTACCAAGAGATGATGAAACGTGACAAATATTGTTGTCCCATATGCTCCAAGTCGGTGATTGACATGTCTAGGATGTGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGAAGATTATCGATTCAGAAAGGATGTGTTGAAATGGTACAGAATCTTCCTGTGCATATCAATTACACATGTATACATAAGAATATAG 735 0.419 MEAERLDFGKMGYGCNHYRRRCSIRAPCCNEIYSCRHCHNEATTFFNNPFDRHELVRQDVQQVVCSVCDTEQPVAQVCTNCGVRMGEYFCDICKFFDDDTEKEVFHCDDCGICRVGGRHNFFHCKKCGSCYSIALRDKHVCVENSMRHHCPICYEYLFDSLKDTIVMRCGHTMHHECYQEMMKRDKYCCPICSKSVIDMSRMWKRIDEEIEATVMPEDYRFRKDVLKWYRIFLCISITHVYIRI 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02809 244 Pfam Ring finger domain 149 192 IPR001841 -
Cca11g02809 244 ProSiteProfiles Zinc finger CHY-type profile. 8 83 IPR008913 GO:0008270
Cca11g02809 244 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 3 244 - -
Cca11g02809 244 Pfam CHY zinc finger 15 95 IPR008913 GO:0008270
Cca11g02809 244 SUPERFAMILY RING/U-box 149 200 - -
Cca11g02809 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 225 IPR013083 -
Cca11g02809 244 ProSiteProfiles Zinc finger CTCHY-type profile. 85 149 IPR017921 -
Cca11g02809 244 ProSiteProfiles Zinc finger RING-type profile. 150 193 IPR001841 -
Cca11g02809 244 SUPERFAMILY CHY zinc finger-like 12 84 IPR037274 GO:0008270
Cca11g02809 244 SMART ring_2 150 192 IPR001841 -
Cca11g02809 244 SUPERFAMILY Zinc hairpin stack 86 143 IPR037275 -
Cca11g02809 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 3 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02809 Cca-Chr11 55516281 55519723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02809 7 226 C2H2 Transcription Factor Family AT3G18290 38.938 3.73e-44 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02809 K10144 - gmx:100792038 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02809 11 55516281 55519723 Cca11g02809 11 55516281 55519723 ECH
Cca11g02809 11 55516281 55519723 Cca02g01315 02 31468032 31470563 ECH
Cca11g02809 11 55516281 55519723 Cca03g02738 03 48729413 48732069 ECH