Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02807 ATGGGGAGGCCGTCCAAAACTAAGGTTTCCAACGACTCATCTTCTTCCTCcgaggaggaggacgacgacgcccccgccgccaaccaccagatcgaagacgacgacgaggaGCTCGAAGCGGTGGCTCGCTCCGCCAGCTCCAACGACGGCGATAATTCGTCAGACGAAGCCGCTCAAGATGACGACGAGGACAAACAGAAGGAGAGTAATGCTGATCCTGAAGTTAGCAAGCGTGAGAAGGCCAGATTGAGAGAAATGCAGCAATTGAAGAAACAGAAAATTCAGGAGATATTGGACGCGCAGAATGCGTCCATTGATGCTGATATGAATAATAGAGGAAAGGGCCGATTGAACTATCTCCTACAGCAAACTGAACTCTTTGCTCATTTTGCCAAAGGTGACCAATCTTCTCAAAAGAAGAAGACAAAGGGGAGGGGGCGCCATGCATCAAAAGTAACTgaagaagaggaagatgaagaataccttaaagaagaagaagaTGGTTTAGCAAGCACACGGCTGGTGACTCAACCATCATGTATTCAAGGGAAGATGAGAGATTACCAGCTTGCTGGGCTAAACTGGCTCATACGGTTGTATGAGAATGGCATAAATGGAATTCTGGCAGATGAAATGGGGCTTGGCAAAACCTTACAAACAATATCTTTGTTAGGCTACTTACATGAGTTCAGAGGAATAACAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGCCCTGTTTTACGTGCAATAAAGTTCCTTGGCAACCCTGATGAAAGGAAGCACATACGAGAGGAGTTACTCGTTGCTGGTAAGTTTGATGTGTGTGTTACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTTTACGGCGATTTAGTTGGCGCTACATAATTATTGATGAGGCCCATCGTATCAAGAATGAGAACTCACTCCTGTCCAAAACAATGAGGCTATACAATACAAACTATCGACTCCTCATAACAGGCACACCATTACAGAACAATCTGCATGAACTCTGGGCTCTTCTCAACTTTCTTTTGCCTGAAATATTTAGTTCTGCAGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATGAACATGAGGTTGTTCAGCAGTTACACAAGGTCCTACGTCCATTTCTTCTTCGGAGGTTGAAGTCAGACGTTGAGAAAGGGTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGAATGTCACAAATGCAGAAACAGTATTATAAGGCATTACTGCAGAAGGATTTGGAGGTTGTGAATGCAGGTGGAGAACGGAAACGTCTCCTAAATATAGCAATGCAACTACGTAAATGTTGTAATCACCCATATCTCTTCCAAGGTGCTGAACCTGGTCCTCCATATACAACTGGAGACCATCTCATTACAAATGCTGGTAAAATGGTTCTACTGGATAAGCTACTTCCTAAGCTAAAAGAGCGGGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATCTCATGTTTCGTGGATACCAATATTGTCGCATAGATGGCAATACTGGTGGAGAAGATCGGGATGCTTCCATTGAGGTTTTCAACAAACCAGGAAGTGAAAAATTTGTCTTCTTGTTATCTACTCGGGCTGGAGGTCTTGGCATTAATCTTGCTACTGCTGATGTTGTTATTCTTTATGACAGTGACTGGAACCCACAAGTTGACTTGCAAGCTCAAGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGGTTTTGCACTGAGTATACAATTGAGGAAAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGTTTAGCTGAACAGAAGACTGTTAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCTAAAGGAGAGGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTGTATGATTTTGATGATGCGAAGGATGAGAACAAATTTGATTTCAAAAAAATTGTGAGTGAAAACTGGGTTGAGCCACCAAGAAGAGAACGGAAGCGCAATTACTCGGAGTCTGAATACTTCAAGCAAACTATGCGGCAAGGTGGTCCTACTAAACCAAAAGAGCCCCGTATTCCTAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACAAAGGTTGAGTGAGCTGTATGAAAAGGAAGTTCGCTACCTCATGCAAACACATCAGAAGAATCAGGTGAAAGATTCCATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTGACTGCTGAAGAGTTAGAAGAAAAGGAGCAGTTGCTAGAGGAGGGATTTTCATCATGGAGCCGGAAGGATTTCAATGCTTTCATTAGGGCCTGTGAAAAGTATGGCCGAAATGATATAAGAAGTATTGCTTCTGAGATGGAAGGAAAAACACAGGAGGAAGTTGAAAGATATGCAAGAGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATAATTAAAAACATCGAAAGAGGGGAGGCAAGAATATCCCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCTTGGCTGGAATTGAAGATACAATATGGGCAAAACAAAGGGAAGTTATACAATGAAGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGCTATGGTAATTGGGATGAGTTGAAGGCAGCTTTTCGAATGTCACCCTTGTTTCGTTTTGATTGGTTTGTCAAGTCTCGCACAACACAGGAACTTACAAGGAGGTGTGACACCCTCATTCGGCTGGTAGAGAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCGGCCAAGAGCATGACCCCGTCGAAGCGTTCCTTGCCTAGACAGACTGAGAGTCCCTCTCTGAAGAAGCGGAAACAGTTAACCATGGATGACTATTTAGGCTCGGGGAAGAAGAAAAAATAA 3183 0.4062 MGRPSKTKVSNDSSSSSEEEDDDAPAANHQIEDDDEELEAVARSASSNDGDNSSDEAAQDDDEDKQKESNADPEVSKREKARLREMQQLKKQKIQEILDAQNASIDADMNNRGKGRLNYLLQQTELFAHFAKGDQSSQKKKTKGRGRHASKVTEEEEDEEYLKEEEDGLASTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERKHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDEHEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIEVFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDAKDENKFDFKKIVSENWVEPPRRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQVKDSIDVDEPEEVGDPLTAEELEEKEQLLEEGFSSWSRKDFNAFIRACEKYGRNDIRSIASEMEGKTQEEVERYARVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAAKSMTPSKRSLPRQTESPSLKKRKQLTMDDYLGSGKKKK 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02807 1060 Gene3D - 924 1027 - -
Cca11g02807 1060 MobiDBLite consensus disorder prediction 1007 1024 - -
Cca11g02807 1060 Coils Coil 76 103 - -
Cca11g02807 1060 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 748 838 IPR036306 GO:0003677|GO:0006338|GO:0031491
Cca11g02807 1060 Gene3D - 186 401 IPR038718 -
Cca11g02807 1060 SMART helicmild6 516 600 IPR001650 -
Cca11g02807 1060 MobiDBLite consensus disorder prediction 132 168 - -
Cca11g02807 1060 Gene3D - 406 698 IPR027417 -
Cca11g02807 1060 SUPERFAMILY Homeodomain-like 839 889 IPR009057 -
Cca11g02807 1060 MobiDBLite consensus disorder prediction 1036 1060 - -
Cca11g02807 1060 MobiDBLite consensus disorder prediction 1007 1060 - -
Cca11g02807 1060 MobiDBLite consensus disorder prediction 16 39 - -
Cca11g02807 1060 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 8 1060 - -
Cca11g02807 1060 Gene3D iswi atpase 891 923 - -
Cca11g02807 1060 PANTHER SNF2/RAD54 HELICASE FAMILY 8 1060 - -
Cca11g02807 1060 Pfam Helicase conserved C-terminal domain 488 600 IPR001650 -
Cca11g02807 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 683 IPR027417 -
Cca11g02807 1060 SUPERFAMILY Homeodomain-like 891 1013 IPR009057 -
Cca11g02807 1060 MobiDBLite consensus disorder prediction 1 80 - -
Cca11g02807 1060 SMART sant 938 999 IPR001005 -
Cca11g02807 1060 SMART sant 836 885 IPR001005 -
Cca11g02807 1060 CDD DEXHc_SMARCA1_SMARCA5 182 402 IPR044754 GO:0005524
Cca11g02807 1060 Pfam SLIDE 893 1003 IPR015195 GO:0003677|GO:0005634|GO:0006338
Cca11g02807 1060 CDD SF2_C_SNF 486 611 - -
Cca11g02807 1060 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 490 641 IPR001650 -
Cca11g02807 1060 Pfam HAND 749 832 IPR015194 GO:0003677|GO:0006338|GO:0031491
Cca11g02807 1060 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 362 IPR014001 -
Cca11g02807 1060 Coils Coil 986 1020 - -
Cca11g02807 1060 Pfam SNF2-related domain 198 465 IPR000330 GO:0005524|GO:0140658
Cca11g02807 1060 SMART ultradead3 181 373 IPR014001 -
Cca11g02807 1060 ProSiteProfiles SANT domain profile. 835 887 IPR017884 -
Cca11g02807 1060 MobiDBLite consensus disorder prediction 63 80 - -
Cca11g02807 1060 CDD SANT 839 883 IPR001005 -
Cca11g02807 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 400 IPR027417 -
Cca11g02807 1060 Gene3D ISWI, HAND domain 737 835 IPR036306 GO:0003677|GO:0006338|GO:0031491
Cca11g02807 1060 Gene3D - 836 890 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02807 Cca-Chr11 55500582 55508942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02807 206 627 RAD5 or RAD16-like Gene Family AT1G02670 27.525 1.54e-42 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca11g02807 SNF2_N 2.6e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02807 K11654 - gmx:100791510 1993.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02807 11 55500582 55508942 Cca11g02807 11 55500582 55508942 ECH
Cca11g02807 11 55500582 55508942 Cca08g02214 08 55535248 55544455 PCT