Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02806 ATGGGTGGGTGTGTTTCTTGTATTAATCAAGCATTTTCCAACAGGGGAGAGGAATCACAATCTGGAAGTGGAAGTGGAAGTGGGAACAGCCAAGTTACTATTGTTCGCTCTGCCAGGCCTAGTACAGATAGAAGAAGAGGACGACAAGAGAATCGTGTTGTTGTTGGGTCAACAGCAGCAACATTTACATTCCGAGAGCTGATAGTTGCTACAGAGCATTTTGGGCAACAAAATTTTTTAGGTCAAGGAGGGTTCGGGCGTGTGTACAGAGGTGAACTTAGGGGAGAAATAGttgcagtgaaacagcttgatcaggaaagccaacaaggaaaccaagaatttatggcggaagttaacatgctgagcctcttgcatcacccaaatcttgtgaacctagttggatactgttcggagggtgatcagcgactactggtttacgaatacatgGAATTGGGGTCTTTGGAGAATCATTTATATGAGCTTGCTCCTGACAGGCAGCCACTTGACTGGAAGACCAGGATGAAAATAGCATTTGGAGCAGCAAAGGGGTTAGAATATTTGCATGAGAGGAGTGTCATATTTAGAGACTTGAAGTCATCCAACATCCTACTGGGGGAGGATTATCATCCAAAGTTATCAGATTTTGGCTTAGCAAGAAGCGGTCCGGTGGGTGATCAGACTCATGTATCCACCCTGGTGAAGGGAACATATGGCTACTGTGCACCAGAATATCTCATGACTGGTCATCTAACTCCCAAATGTGATGTGTATGCATTCGGAGTGGTCATCCTCGAACTTATTACGGGGCGCAAGGCTGTTGATGGTAGCCGTCCACCTGATGAGCGACATCTTGTTTTGTGGGGAAGACCTCTTTTTAAAGACCGCAAGATGTTCCAAACACTTGCTGACCCTCTACTTGGGGGGAATTATCCAAAGCGATCACTTTACAATGCACTTGCTGTTGCAGCAATGTGTGTGCAGCACAACCCTGATGCAAGGCCTGTCATGCCAGATGTTGTTAGTGCTCTCACATTTCTGGGTGCAGATGAACATGATGGAGCTGGTTCATCAACAGCAGCTGGAAATAGAGAAGATGCTGGACAGATTGACACTCCCACAAATGCTGGAACACAGTTAAACACCAGTGAAATTGTAGAAGAAAGTCAGCAATCACAGAGACCCACCAGTTCTACAAATGTAGAAGAAAGTCAGCAATCACAGAGACCCACCAGTTCTACAAATGAGTAA 1248 0.399 MGGCVSCINQAFSNRGEESQSGSGSGSGNSQVTIVRSARPSTDRRRGRQENRVVVGSTAATFTFRELIVATEHFGQQNFLGQGGFGRVYRGELRGEIVAVKQLDQESQQGNQEFMAEVNMLSLLHHPNLVNLVGYCSEGDQRLLVYEYMELGSLENHLYELAPDRQPLDWKTRMKIAFGAAKGLEYLHERSVIFRDLKSSNILLGEDYHPKLSDFGLARSGPVGDQTHVSTLVKGTYGYCAPEYLMTGHLTPKCDVYAFGVVILELITGRKAVDGSRPPDERHLVLWGRPLFKDRKMFQTLADPLLGGNYPKRSLYNALAVAAMCVQHNPDARPVMPDVVSALTFLGADEHDGAGSSTAAGNREDAGQIDTPTNAGTQLNTSEIVEESQQSQRPTSSTNVEESQQSQRPTSSTNE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02806 415 Gene3D Phosphorylase Kinase; domain 1 35 148 - -
Cca11g02806 415 MobiDBLite consensus disorder prediction 15 38 - -
Cca11g02806 415 PANTHER OS07G0668900 PROTEIN 28 378 - -
Cca11g02806 415 CDD STKc_IRAK 80 344 - -
Cca11g02806 415 SMART serkin_6 74 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02806 415 ProSiteProfiles Protein kinase domain profile. 74 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02806 415 ProSitePatterns Protein kinases ATP-binding region signature. 80 101 IPR017441 GO:0005524
Cca11g02806 415 Gene3D Transferase(Phosphotransferase) domain 1 149 360 - -
Cca11g02806 415 Pfam Protein tyrosine and serine/threonine kinase 78 342 IPR001245 GO:0004672|GO:0006468
Cca11g02806 415 MobiDBLite consensus disorder prediction 350 415 - -
Cca11g02806 415 SUPERFAMILY Protein kinase-like (PK-like) 61 349 IPR011009 -
Cca11g02806 415 PANTHER OS07G0668900 PROTEIN 28 378 - -
Cca11g02806 415 MobiDBLite consensus disorder prediction 361 415 - -
Cca11g02806 415 MobiDBLite consensus disorder prediction 15 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02806 Cca-Chr11 55497837 55499503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02806 4 347 Glycoside Hydrolase AT3G07070 54.902 2.83e-134 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Cca11g02806 PK_Tyr_Ser-Thr 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02806 - K13430 han:110926160 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02806 11 55497837 55499503 Cca08g02215 08 55547631 55556612 PCT