Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02800 ATGTCAACCTCTAGAACCTCAGATACACCCTTCAAGGGATATGACCCCAATAACCAAACTCAAATGTGCCTCTCTCTCCTCCAACGCAACACATCACCTTGTGGTGAGAGAAGAGGCAGAAGGAAGCAAGCAGAGCCAGGGAGGTTCCTTGGAGTTAGGAGGCGCCCATGGGGCCGTTATGCTGCTGAAATCAGAGACCCCACAACCAAAGAGAGGCATTGGCTTGGCACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTTTGTCCATGAAAGGAAGCCAAGCAAGGACCAACTTTGTTTACTCTGACAACATCAACTTCCACACTCTCCTTTCTCCTGTGGATGTTCAACTTCAAGTTCAAGTCCAACCCCTCTTGCCACCTTCACACTTTCTCACTAACACTAACACCACTCAGGCCAAACAACCAACCAACCACAATAGTCTCTCTCAGGTTACTCATGCTCCAAACTGTGGAAACCCCTCCCCAATGAACAATATTGAAACTACACATGGGTCAGCTCAGGATGATGATTTCTTCTTTTCCAGTGATTCTAACTCAGGCTATCTGGAATGCATAGTTCCTGATAATTGCTTCAGACCTAGTTCAAGCTCCAGAAAGAGCAATGTGAGTGATCAAAAGCTTAACACAAGCTCCATGGAGAGTACTCATGAGTATGAGTACCACTCACATGTTGACATGACCTCATTCTCTCAAGAAATGGCACCAAGGGAGTCAAACTATTCAGATTTTTATTATCCAAGTGAAGGATCATGGGATTGGAATAGTAGTGAACTTTCAGCAATATTTAAGAACCCATTAAGGGTTGAAGATGGGTGCATGGATGCATTTAATGATAGTCCAAGCTATGGGGTAATGAATCAGGGTGCTTCTTCAACTTCAACTAACTGTTCTCCATCACTTCCATCCTTTGGGGACGTAGACTTGGGATACCCACTCTTCTGA 981 0.4495 MSTSRTSDTPFKGYDPNNQTQMCLSLLQRNTSPCGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFVYSDNINFHTLLSPVDVQLQVQVQPLLPPSHFLTNTNTTQAKQPTNHNSLSQVTHAPNCGNPSPMNNIETTHGSAQDDDFFFSSDSNSGYLECIVPDNCFRPSSSSRKSNVSDQKLNTSSMESTHEYEYHSHVDMTSFSQEMAPRESNYSDFYYPSEGSWDWNSSELSAIFKNPLRVEDGCMDAFNDSPSYGVMNQGASSTSTNCSPSLPSFGDVDLGYPLF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02800 326 MobiDBLite consensus disorder prediction 206 229 - -
Cca11g02800 326 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 326 - -
Cca11g02800 326 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Cca11g02800 326 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Cca11g02800 326 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Cca11g02800 326 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 326 - -
Cca11g02800 326 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Cca11g02800 326 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Cca11g02800 326 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Cca11g02800 326 Pfam AP2 domain 51 97 IPR001471 GO:0003700|GO:0006355
Cca11g02800 326 MobiDBLite consensus disorder prediction 206 228 - -
Cca11g02800 326 CDD AP2 48 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02800 Cca-Chr11 55387710 55388799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02800 1 206 AP2-EREBP Transcription Factor Family AT5G18560 47.451 3.58e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca11g02800 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02800 - - gmx:100812047 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02800 11 55387710 55388799 Cca08g02222 08 55643200 55644096 PCT