Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02799 ATGTTGGTGACTTTCCTTATGTGTTGGTTGTATCTGCTCATGGTTAAACTCCAGTACTATATGAGGACGGGATCATGCAAGTTTGGTGCATCCTGCAAGTACCACCATCCTAGGCAGGCGGCTGGCACTGCTACCCCTGTGCCGCTAAATTATTATGGATATCCATTGCGAGTGGGTGAGCAAGAGTGTTCCTATTATGTGAAAACTGGACAGTGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACAACCTGCAGGTGTCCAAGTTCTAGCACCATCTCCAGTTCCCCCAGTTTCACCTCTGCCTGTACCTGTACCTTCACCAATATATCCAACTGTACAGCCCCCGTCTGGTCCTTCGTCACAGCAATATGGTGTGCTAGTTGCAAGGCCACCTATGATACCTGGCTCAGTAGTTCAGGGTCCCTATGGGCCTATGGTAGTGTCCCCTGCCATGGTCCCTTTTTCAGGCTGGGGTCCTTACCAGGCTCCTGCAACAAACCCTGTACTTCCATCTAGCACCACGTCTAATGTTGTTTCAACACAGATTTATGGGATAACCCAGCTACCTTCATCGGCAGCTACTTACACCGGACCTTATCAGCCTTCTGGTTCGTCAATTGGTCCTTCAGGTGCTAGTCAGAATGAGCATCCATTTCCAGAAAGGCCAGATCAACCAGAATGTCATTATTACATGAAAACAGGGGAGTGTAAATTTGGTCCATCATGTAGATATCATCATCCACCAGACAAGAGTGCACCAAAAGCCAGCGTGATCCTTAGTCCTGTGGGTCTTCCTTTGCGTCCGGGGGCACCACTTTGCACTCATTATACTCAGCGTGGAGTTTGCAAGTTTGGTTCTGCATGCAAATTTGATCACCCTATGGGATCACTGAGTTATAGTCCATCTGCATCTTCCCTGGCTGACATGCCAGTTGCACCCTATCCTGTGGGTTCCTCAGTTGGTACTCTTGCCCCATCATCTTCGTCCTCAGAGTTACGGCCCGAACTTGGTGCAGGATCCAGCAAGGAGACTGTTTCGTCCAGAATGTCTTCAATGAGCACATCGACTGGATCAGTTGGCTTGACCCTGTCAAGCGTTGGACCCATTTCTCACTCAAGCACCCATCCATCTGCTCCGAGTTCTACTCAGAGTTCTAGTTCTTCTGCATCCACCAGTGTTACTGCAAGTAACACTATTCCTCACACCTCAAGCTAA 1221 0.4873 MLVTFLMCWLYLLMVKLQYYMRTGSCKFGASCKYHHPRQAAGTATPVPLNYYGYPLRVGEQECSYYVKTGQCKFGATCKFHHPQPAGVQVLAPSPVPPVSPLPVPVPSPIYPTVQPPSGPSSQQYGVLVARPPMIPGSVVQGPYGPMVVSPAMVPFSGWGPYQAPATNPVLPSSTTSNVVSTQIYGITQLPSSAATYTGPYQPSGSSIGPSGASQNEHPFPERPDQPECHYYMKTGECKFGPSCRYHHPPDKSAPKASVILSPVGLPLRPGAPLCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSVGTLAPSSSSSELRPELGAGSSKETVSSRMSSMSTSTGSVGLTLSSVGPISHSSTHPSAPSSTQSSSSSASTSVTASNTIPHTSS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02799 406 MobiDBLite consensus disorder prediction 196 214 - -
Cca11g02799 406 MobiDBLite consensus disorder prediction 321 406 - -
Cca11g02799 406 SMART c3hfinal6 57 84 IPR000571 GO:0046872
Cca11g02799 406 SMART c3hfinal6 223 250 IPR000571 GO:0046872
Cca11g02799 406 SMART c3hfinal6 269 296 IPR000571 GO:0046872
Cca11g02799 406 SMART c3hfinal6 16 38 IPR000571 GO:0046872
Cca11g02799 406 MobiDBLite consensus disorder prediction 196 226 - -
Cca11g02799 406 Gene3D - 267 317 - -
Cca11g02799 406 ProSiteProfiles Zinc finger C3H1-type profile. 7 39 IPR000571 GO:0046872
Cca11g02799 406 ProSiteProfiles Zinc finger C3H1-type profile. 223 251 IPR000571 GO:0046872
Cca11g02799 406 PANTHER PROTEIN PHOSPHATASE RELATED 18 385 - -
Cca11g02799 406 SUPERFAMILY CCCH zinc finger 59 85 IPR036855 GO:0046872
Cca11g02799 406 ProSiteProfiles Zinc finger C3H1-type profile. 269 297 IPR000571 GO:0046872
Cca11g02799 406 SUPERFAMILY CCCH zinc finger 226 252 IPR036855 GO:0046872
Cca11g02799 406 MobiDBLite consensus disorder prediction 322 406 - -
Cca11g02799 406 ProSiteProfiles Zinc finger C3H1-type profile. 57 85 IPR000571 GO:0046872
Cca11g02799 406 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 18 385 - -
Cca11g02799 406 SUPERFAMILY CCCH zinc finger 272 299 IPR036855 GO:0046872
Cca11g02799 406 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 18 38 IPR000571 GO:0046872
Cca11g02799 406 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 60 84 IPR000571 GO:0046872
Cca11g02799 406 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 225 250 IPR000571 GO:0046872
Cca11g02799 406 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 296 IPR000571 GO:0046872
Cca11g02799 406 Gene3D - 18 92 - -
Cca11g02799 406 Gene3D - 214 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02799 Cca-Chr11 55380981 55385690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02799 18 379 C2H2 Transcription Factor Family AT5G18550 52.703 4.46e-107 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca11g02799 zf-CCCH 5.7e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02799 - - gmx:100789405 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02799 11 55380981 55385690 Cca11g02799 11 55380981 55385690 ECH
Cca11g02799 11 55380981 55385690 Cca08g02223 08 55646430 55653073 PCT