Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02798 ATGAGAGATTACCAGCTTGCTGGGCTAAACTGGCTCATACGGTTGTATGAGAATGGCATAAATGGAATTCTAGCAGATGAAATGGGGCTTGGCAAAACCTTACAAACAATATCTTTGTTAGGCTACTTACATGAGTTCAGAGGAATAACAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATAAATTCGGCGCTTTTGCCCTGTTTTACGTGCAATAA 237 0.4093 MRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNKFGAFALFYVQ 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02798 78 Gene3D - 1 77 IPR038718 -
Cca11g02798 78 PANTHER ISWI CHROMATIN-REMODELING COMPLEX ATPASE CHR17 1 72 - -
Cca11g02798 78 Pfam SNF2-related domain 4 72 IPR000330 GO:0005524|GO:0140658
Cca11g02798 78 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 72 IPR027417 -
Cca11g02798 78 PANTHER SNF2/RAD54 HELICASE FAMILY 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02798 Cca-Chr11 55378525 55378906 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02798 4 72 RAD5 or RAD16-like Gene Family AT1G05120 36.486 1.06e-08 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca11g02798 SNF2_N 6.1e-15 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02798 K11654 - aof:109831793 143.665