Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02797 ATGTTGCAGAACAATCTGCATGAACTCTGGGCTCTTCTCAACTTTCTTTTGCCTGAAATATTTAGTTCTGCAGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATGAACATGAGGTTGTTCAGCAGTTACACAAGGTCCTACGTCCATTTCTTCTTCGGAGGTTGAAGTCAGACGTTGAGAAAGGGTTGCCACCGAAAAAGGAAACCATTCTCAAAAACAATCTGCATGAACTCTGGGCTCTTTTCAACTTTCTTTTGCCTGAAATATTTAGTTCTGCAGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATGAACATGAGGTTGTTCAGCAGTTACACAAGGTCCTACGTCCATTTCTTCTTCGGAGGTTGAAGTCAGACGTTGAGAAAGGGTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGAATGTCACAAATGCAGAAACAGTATTATAAGGCATTACTGCAGAAGGATTTGGAGGTTGTGAATGCAGGTGGAGAACGGAAACGTCTCCTAAATATAGCAATGCAACTACGTAAATGTTGTAATCACCCATATCTCTTCCAAGGTGCTGAACCTGGTCCTCCATATACAActggagaccacaggagtgtgacggccatgacaggtcgttacaCTTattaa 666 0.3754 MLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDEHEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKNNLHELWALFNFLLPEIFSSAETFDEWFQISGENDEHEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHRSVTAMTGRYTY 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02797 221 Gene3D - 74 130 IPR038718 -
Cca11g02797 221 PANTHER ISWI CHROMATIN-REMODELING COMPLEX ATPASE CHR17 74 213 - -
Cca11g02797 221 PANTHER ISWI CHROMATIN-REMODELING COMPLEX ATPASE CHR17 2 75 - -
Cca11g02797 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 67 IPR027417 -
Cca11g02797 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 139 IPR027417 -
Cca11g02797 221 Gene3D - 1 73 IPR038718 -
Cca11g02797 221 Pfam SNF2-related domain 74 194 IPR000330 GO:0005524|GO:0140658
Cca11g02797 221 Gene3D - 135 217 IPR027417 -
Cca11g02797 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 198 IPR027417 -
Cca11g02797 221 PANTHER SNF2/RAD54 HELICASE FAMILY 74 213 - -
Cca11g02797 221 PANTHER SNF2/RAD54 HELICASE FAMILY 2 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02797 Cca-Chr11 55367646 55370248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02797 72 220 RAD5 or RAD16-like Gene Family AT5G22750 22.840 6.22e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca11g02797 SNF2_N 2.3e-27 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02797 K11654 - ccaj:109807392 416.387