Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02796 ATGGCTCCTTCTAGGAAATCTAGAAGTGTAAATAAGAGGTTTTCTAATGTTCGTGAGGCTGCATCTAGTAAAGACAAAAATTCAGAGAATGCAAGCAAAAATAGGCTGAAGGCAAGTCCTGGTATTCAGAAGAAGAGAAAATTGGCTGACATGTTAGGGCCACAATGGAATAAGGAGGAACTCGAGCATTTCTATGATGCTTACCGTAAATATGGGAAAGATTGGAAGAAGGTTGCTCTTGCAGTACGTAATAGATCTGTGGAAATGGTGGAGGCCCTGTACACTATGAACAAGGCATATTTATCTCTTCCAGAGGGTACTGCTTCTGTTGTTGGATTGATAGCAATGATGACAGATCATTATAGTGTCCTGGGAGGAAGTGACAGTGGTAAAGAAAGCACTGATGATGCAGAAATATCTAAAAGGTCTCAAAAGCGTTTGCGGGGAAAGCATCCAAGTGACAATAAAGCATTAGATGGGCACTTTTCAGATAATTCTCAGTCACATTCTGTTGCATCAGGTGATGGTTGCCTGTCATTGTTGAAGAATAGACATTCTGGAATTAGGTCTCATGCTGTTCGAAAAAGGACTCCCCGTGTCCCTATTTCATATTCTATCGGAAAAGATAATGGAGATCGGTTTTTTTCATCTGCCAGGCCTGGCTCCAAACAAATGGTTGATACTAATGATGTTACTCATAAGATTGCATTAGCATTGGCAGAGGCATCACAAAGAGGTGGATCTTCAAAAATTTCTGGATCACCCGACAAAAAATTTTTGCCCTCACCAGGTCTGAAAAGTGGGAAGAAGCATCCTAAATCAGAACTTGCTGGAGCCAAGTTTGGCAGTTCTGATTTGGATGATGGTAGTTCTGAGTTGAGTTTAGGAAGCACTGAAGGTAATAATGAAGATTATTCTAGAAAAACAATTCATCGAAGTGGTAGagaaaataccggaagaggaaggaatcaagaaaagaaaataaaacaaTACAGGAAGAATGAGCCAGAGGAGAATTTAAACAAGCATTTGAATGACATAAAGGAAGCCTCCAGTGGGACAGATGATGGCAAAACTCTTAGTTTTATCAAATCCAATTTTGACCCAGATTTTGCAGATGCAAAGAATACAAGGTCCTCTTACAAGGGTTCCAGGATGAAAAGTAAAAGGCTACTGTTAGAAAAAGATGAAGGTTCCGCTTTTGATGCTCTGAAAACTTTGGCTGATCTCTCTTTGATGCTGCCAGTCACAAATCCCGACACTGAGTCGTCTGCACAGTTCAAGGAAGGAAACCATGATGTTGTTGATGAATCTAAAATGGAAACACATAATGTATTTCCTAGGATTGAAAGCACTGCTTCAAGTAAATCGGGCAAGGTTTTCTTCAATAATGGAGTTGCTGTTCCTGAATCAGAGGGAACAGACCAGCTTAATGCAGGATTTAGGAAAAGGAAACAAAAATCTTTTAACTTGAAAAATGATGAAACTCATACTGGTTTTCATTTAAGTGGTTCCCAGAAAATCAAGGCTACTGATGAGGTGAAGAAACCCATGGTTAAAGGAAAGCGGTCATCTGTTTCTACTGCACATTCAAGACAACTAAAAGTTGTGAAATCCCCAGGAAATCCGTCTTCTAGCACTAATGACAAAGGGCAAGGGGATGATTCATCTTTTTCGCCCATGAAGGTTTCATCAACTAACCAAGTCAGTCCAGTAAACAGAGTAAGGCCAAGAAGAAAGATGGAAAAACCAAAACCAATGGTACAAAAAGATTCGGTTGTGTCTAGAAATATTTTTAGTGGTCAACGTAATAAATCGAATGCTTCTCTCCAAAATCGCTCTTCTAGTCAAAAGGGAAAGCTTATCAATTGTGTGTCTTCGTATCAAATGCGACGATGGTGCACTTTTGAGTGGTTTTATAGTGCTATTGATTACCCTTGGTTTTCAAAGAGAGAGTTTGTGGAGTACTTAGACCATGTTGGATTGGGTCATGTTCCAAGATTGACTCGTATTGAGTGGGGTGTCATTAGAAGTTCTCTTGGCAGACCACGAAGATTTTCCGAGCAATTTTTGATAGAAGAAAAACATAAACTTAATCAATACAGGGAATCTGTTAGATCACATTATGCTGAAATTCTTGCTGGTACCAAGGAAGGACTTCCTACTGATTTGGCCCAGCCTTTAATTGTTGGGCAGCGTGTTATTGCTATTCATCCAAAGACGAGGGAGATTCATGATGGAAGTGTACTAACTGTTGACCATTGTAGGTATAGGGTTCAGTTTGACCAGCCTGAACTTGGGGTTGAATTTGTCATGGATATTGACTGCATGCCTTTTTATCCATTTGAAAATATGCCTACATCTCTTATACAACACAATATTTCTTCTGCTCAAATAAACGAGAACTTGAATGAGCTCAAGCCTAATGGAAAACTGAAACAGAGAAAGGTTGCTGGGCACACAATATTGTCCCCTAGTGAGAACTTGGATACCTTAAAAAATCTTCATATATCCCCCAATATGCACAGAAGCAGTACTTTATCAAAACAGGGTTTTTCTTCAAGCTCCAAATCGCAACTGAAAGTTGTTTGCAGTGAGATTGGTAACGCCCAACTAGCATCAAGTTCTCAACCTTCCCTTCTTGAACATGTCCATTCAAAAGAAGCTGACATATTAGCTATTTCAGAGTTGAATCGTGCTCTGGACAAAAAGGAACTTGTATTGTCTGAACTGAAGCACATGAACGATGGGGTATCAGAGAGCCAGAAATATGGAGACAGCTCGGTGAAGGATTCAGAACCTTTTAGGAGAAATTATGCTTCAGTACTAAAGCAATTAACTGAAGCCAATGAACAGGTCTCTTCTGCTTTGTTTTGCTTGAGACAACGCAACACATATCAAGGAAGCTCCTCTGTTTTGTCGTTAAAGCCCATGGTTAATTTTGATGATCCTAGTGGTCAGGCCAGCTCTTCCAATTGTTCAGTTTGCCACAATCAAGAACCTGTATCTCAAAGTCATATAACTGAAATTGTTGAGAGTTCAAGAAGAAAAGCACGAACAATGGTTGTTCAAGCCACACAGGCAATGTCAAATTTaagaaagacagaaagtaaggttgaaagaaTTGAGGATGCAATAAGGTTTATCAATAGTCAACTTTCGCTGGAAGACCCTACTGCTTCAGCCACAATATTTCTGCCTGCAGACTCTTTTACTCTGGCTTCTCAGGATCAATTGACTGCTAGTGTATTAAATCCATTGGCAAGTTGTCATGTACAAGATGCTGAACTTAACAGTTCATCTGACCAAAATGAAATGAAAATTCCCTCAGAACTTATATCTCATTGCCTAGCTACATTGTTCATGATTCAGAAGTGTACGGAACGACAATTTCCCCCAGCTGATGTTGCTCAGGTACTAGATTCCGCTGTCACCAGTTTGCAGCCATTATGTTCAAAGAATCTTCCAATATATGGTGAGATACAGAAATGCATGGGTATTATAAGAAATCAGATATTGGCACTTATACCTACATAG 3537 0.389 MAPSRKSRSVNKRFSNVREAASSKDKNSENASKNRLKASPGIQKKRKLADMLGPQWNKEELEHFYDAYRKYGKDWKKVALAVRNRSVEMVEALYTMNKAYLSLPEGTASVVGLIAMMTDHYSVLGGSDSGKESTDDAEISKRSQKRLRGKHPSDNKALDGHFSDNSQSHSVASGDGCLSLLKNRHSGIRSHAVRKRTPRVPISYSIGKDNGDRFFSSARPGSKQMVDTNDVTHKIALALAEASQRGGSSKISGSPDKKFLPSPGLKSGKKHPKSELAGAKFGSSDLDDGSSELSLGSTEGNNEDYSRKTIHRSGRENTGRGRNQEKKIKQYRKNEPEENLNKHLNDIKEASSGTDDGKTLSFIKSNFDPDFADAKNTRSSYKGSRMKSKRLLLEKDEGSAFDALKTLADLSLMLPVTNPDTESSAQFKEGNHDVVDESKMETHNVFPRIESTASSKSGKVFFNNGVAVPESEGTDQLNAGFRKRKQKSFNLKNDETHTGFHLSGSQKIKATDEVKKPMVKGKRSSVSTAHSRQLKVVKSPGNPSSSTNDKGQGDDSSFSPMKVSSTNQVSPVNRVRPRRKMEKPKPMVQKDSVVSRNIFSGQRNKSNASLQNRSSSQKGKLINCVSSYQMRRWCTFEWFYSAIDYPWFSKREFVEYLDHVGLGHVPRLTRIEWGVIRSSLGRPRRFSEQFLIEEKHKLNQYRESVRSHYAEILAGTKEGLPTDLAQPLIVGQRVIAIHPKTREIHDGSVLTVDHCRYRVQFDQPELGVEFVMDIDCMPFYPFENMPTSLIQHNISSAQINENLNELKPNGKLKQRKVAGHTILSPSENLDTLKNLHISPNMHRSSTLSKQGFSSSSKSQLKVVCSEIGNAQLASSSQPSLLEHVHSKEADILAISELNRALDKKELVLSELKHMNDGVSESQKYGDSSVKDSEPFRRNYASVLKQLTEANEQVSSALFCLRQRNTYQGSSSVLSLKPMVNFDDPSGQASSSNCSVCHNQEPVSQSHITEIVESSRRKARTMVVQATQAMSNLRKTESKVERIEDAIRFINSQLSLEDPTASATIFLPADSFTLASQDQLTASVLNPLASCHVQDAELNSSSDQNEMKIPSELISHCLATLFMIQKCTERQFPPADVAQVLDSAVTSLQPLCSKNLPIYGEIQKCMGIIRNQILALIPT 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02796 1178 MobiDBLite consensus disorder prediction 524 573 - -
Cca11g02796 1178 Pfam DIRP 638 739 IPR033471 -
Cca11g02796 1178 MobiDBLite consensus disorder prediction 126 170 - -
Cca11g02796 1178 MobiDBLite consensus disorder prediction 243 386 - -
Cca11g02796 1178 PANTHER LIN-9 1 1178 IPR010561 GO:0006351|GO:0017053
Cca11g02796 1178 Coils Coil 894 914 - -
Cca11g02796 1178 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1178 IPR028306 -
Cca11g02796 1178 SMART DIRP_2 639 740 IPR033471 -
Cca11g02796 1178 MobiDBLite consensus disorder prediction 1 43 - -
Cca11g02796 1178 SUPERFAMILY Homeodomain-like 52 101 IPR009057 -
Cca11g02796 1178 Coils Coil 1025 1052 - -
Cca11g02796 1178 MobiDBLite consensus disorder prediction 304 353 - -
Cca11g02796 1178 ProSiteProfiles SANT domain profile. 51 88 IPR017884 -
Cca11g02796 1178 MobiDBLite consensus disorder prediction 489 616 - -
Cca11g02796 1178 SMART sant 52 100 IPR001005 -
Cca11g02796 1178 Pfam Myb-like DNA-binding domain 55 90 IPR001005 -
Cca11g02796 1178 MobiDBLite consensus disorder prediction 419 439 - -
Cca11g02796 1178 MobiDBLite consensus disorder prediction 287 303 - -
Cca11g02796 1178 MobiDBLite consensus disorder prediction 199 227 - -
Cca11g02796 1178 CDD SANT 56 98 IPR001005 -
Cca11g02796 1178 MobiDBLite consensus disorder prediction 593 616 - -
Cca11g02796 1178 MobiDBLite consensus disorder prediction 1 17 - -
Cca11g02796 1178 Gene3D - 3 108 - -
Cca11g02796 1178 MobiDBLite consensus disorder prediction 18 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02796 Cca-Chr11 55334397 55348753 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca11g02796 DIRP 2.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02796 - - gmx:100811517 2032.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02796 11 55334397 55348753 Cca11g02796 11 55334397 55348753 ECH