Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02795 ATGTTTAGTCCAAGCATGGATTCTGCGAGGAATGCTGGTGGTTCGGCAGGGACTGTGCTAATTCCCATGCGTTTTGTGTGGCCCTATGGTGGAAGAAGTGTGTATCTATGTGGTTCTTTCACACGGTGGTCTGAACTTCTACAAATGTCGCCAGTGGAAGGCTGCCCAACTGTGTTTCAAGTTATTCATAGCTTGGCCCCTGGTTATCATCAGTACAAATTTTTTGTTGATGGAGAATGGCGGCATGATGAGCATCAACCTTATGTATCTGGAGAATATGGGATAGTTAACACTGTTTTATTGGCTACTGATCCTAATTTTGTACCTGGTTTAACTTCAGACATGATTTCTGGATCTAACATGGATGTGGATAATGAGGCTTTTCAACGAATGGTTCGATTGACAGATGGCACATTAAGTAATGTGTTGTTGCCATTGCCAAGAATATCAGATGCTGATGTACAAACCTCTCGTCAGCGTATTTCTGCATTCCTATCTATGCACACAGCCTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTACCTTGGATGTTGATCTGCCTGTGAAACAGGCATTTCACATACTGCATGAACAGGGAATTCCCATGGCTCCTCTTTGGGACTTATGCAAGGGGCAGTTTGTTGGAGTTCTTAGTGCTTTGGATTTTATTTTAATTTTAAGAGAGCTAGGAAATCATGGGTCTAATCTGACCGAAGAGGAGCTTGAAACGCATACCATATCAGCTTGGAAAGAAGGAAAATGGGCAGCATTTTCAAGAAGTTTTATCCATGCAGGACCATATGATAATTTGAAAGATATTGCTGTGAAGATCCTGCAAAATGGGATTTCAACAGTTCCTATTATCCATTCATCTTCTGAAGATGGTTCATTTCCACAGTTACTACATCTTGCTTCACTCTCAGGAATCCTTAAATGCATTTGCAGGTATTTTAGGAATTGTTCTAGTTCATTGCCTATACTCCAACTTCCAATTTGTGCAATCCCTGTGGGCACGTGGGTGCCCAAAATTGGGGAATCAAATTGCCGGCCTCTAGCAATGTTGAGACCAAGTGCTTCGCTTACTTCAGCCTTAAACTTATTAGTTCAAGCTCAAGTAAGCTCAATACCAATAGTTGATGATAGTGACTCATTACTGGATATATATTGTCGAAGTGATATAACAGCATTGGCAAAGGACAGAGCTTATACACATATTAATCTTGATGAAATGACTGTTCATCAGGCATTGCAATTGGGCCAGGAATCTTACAATCCTTACGAGCTGAGAAGTCAAAGATGCCAGATGTGTTTGCGAACTGATTCTCTGCATAAAGTGATGGAACGTTTGGCAAATCCTGGTGTGAGGCGGCTTGTTATTGTGGAAGCTGGTAGCAAGCGTGTAGAAGGCATTATATCCCTGAGTGACATATTCAAGTTCTTCCTCGGTTAG 1452 0.416 MFSPSMDSARNAGGSAGTVLIPMRFVWPYGGRSVYLCGSFTRWSELLQMSPVEGCPTVFQVIHSLAPGYHQYKFFVDGEWRHDEHQPYVSGEYGIVNTVLLATDPNFVPGLTSDMISGSNMDVDNEAFQRMVRLTDGTLSNVLLPLPRISDADVQTSRQRISAFLSMHTAYELLPESGKVVTLDVDLPVKQAFHILHEQGIPMAPLWDLCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKWAAFSRSFIHAGPYDNLKDIAVKILQNGISTVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGESNCRPLAMLRPSASLTSALNLLVQAQVSSIPIVDDSDSLLDIYCRSDITALAKDRAYTHINLDEMTVHQALQLGQESYNPYELRSQRCQMCLRTDSLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDIFKFFLG 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02795 483 CDD E_set_AMPKbeta_like_N 22 100 - -
Cca11g02795 483 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 483 - -
Cca11g02795 483 Pfam Glycogen recognition site of AMP-activated protein kinase 21 104 IPR032640 -
Cca11g02795 483 ProSiteProfiles CBS domain profile. 429 483 IPR000644 -
Cca11g02795 483 SUPERFAMILY CBS-domain pair 349 482 IPR046342 -
Cca11g02795 483 SUPERFAMILY CBS-domain pair 159 320 IPR046342 -
Cca11g02795 483 Gene3D - 150 323 IPR046342 -
Cca11g02795 483 SMART cbs_1 351 399 IPR000644 -
Cca11g02795 483 SMART cbs_1 179 228 IPR000644 -
Cca11g02795 483 SMART cbs_1 433 482 IPR000644 -
Cca11g02795 483 SUPERFAMILY E set domains 21 102 IPR014756 -
Cca11g02795 483 Gene3D Immunoglobulins 18 101 IPR013783 -
Cca11g02795 483 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 483 - -
Cca11g02795 483 ProSiteProfiles CBS domain profile. 173 235 IPR000644 -
Cca11g02795 483 Pfam CBS domain 350 395 IPR000644 -
Cca11g02795 483 Pfam CBS domain 436 482 IPR000644 -
Cca11g02795 483 Gene3D - 331 483 IPR046342 -
Cca11g02795 483 ProSiteProfiles CBS domain profile. 348 404 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02795 Cca-Chr11 55326028 55333768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02795 4 134 Protein tyrosine phosphatase (PTP) family AT3G52180 24.286 2.90e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02795 - - aprc:113874669 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02795 11 55326028 55333768 Cca11g02795 11 55326028 55333768 ECH