Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02791 ATGGTGGATAACATTGGAGGCAGTTCCTCTAATGCTGAAAACAGTGGCATGAGGGAACAGGACCAGCTGTTGCCAATAGCCAATGTTGGGAGGATCATGAAGCAGATTTTACCTCCCAATGCGAAAATCTCCAAGGAATCAAAGGAAACAATGCAAGAGTGTGTGTCAGAGTTCATAAGCTTTGTAACGAGTGAGGCCTCAGAGAAGTGCAGAAGGGAAAGGAGGAAGACTGTGAATGGAGATGATGTCTGCTGGGCCTTGGCATCGCTTGGTTTTGATGATTATGCAGAGCCATTGAGAAGGTATTTGCATAGATATAGAGAACTAGAAGTAGATAGATCAACTAACCAAGATAGAGGAAATAGCCCCCTCACAAGAGAAGGATCATGA 390 0.4436 MVDNIGGSSSNAENSGMREQDQLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRRERRKTVNGDDVCWALASLGFDDYAEPLRRYLHRYRELEVDRSTNQDRGNSPLTREGS 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02791 129 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Cca11g02791 129 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Cca11g02791 129 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Cca11g02791 129 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 87 IPR003958 -
Cca11g02791 129 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 121 - -
Cca11g02791 129 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 121 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cca11g02791 129 MobiDBLite consensus disorder prediction 1 21 - -
Cca11g02791 129 SUPERFAMILY Histone-fold 20 120 IPR009072 GO:0046982
Cca11g02791 129 MobiDBLite consensus disorder prediction 110 129 - -
Cca11g02791 129 Gene3D Histone, subunit A 10 127 IPR009072 GO:0046982
Cca11g02791 129 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cca11g02791 129 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02791 Cca-Chr11 55256686 55257315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02791 4 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 61.940 5.14e-57 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca11g02791 CBFD_NFYB_HMF 2.4e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02791 K08065 - gmx:100786046 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02791 11 55256686 55257315 Cca11g02791 11 55256686 55257315 ECH
Cca11g02791 11 55256686 55257315 Cca08g01654 08 48098650 48099493 PCT