Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02790 ATGTTGAAACTTCACGCCCACAGAACTATTGTTTGCGCCAAGGCCTTCACATTCACAACCCTAAAACGGTTTCCTATCGTGCAACATCAAATTTTCAAATTCGACTTCTGCACCACCACCTCGCACCCACATTCTTTCGCGGTGTCATACCTCGTCAACAACTGTGGCTTCTCCCTAGAAAACGCTCTCAAAGCTTCTCCCAAGCTCAGATTCCGCGACCCCCAAAAGCCCGATTCAGTTTTCTGCTTCTTCCGAAGCCACGGCTTCTCCGACTCTCAAATATGCATTATCCTCCAAAAAGAACTCCAGTTTCTTTCCTGCAAACCCCAAAAGGTACTGTTGCCAAAGTTCGAGTTTTTACGTTCCAAAGGTGCTTCTTCCCTTGACATTGTTCGCATGGTCACCGCCAACCCTTCATTCCTTAAAAGAAGCTTGGAGAATCATATAATCCCAGCATATGAATTTGTTAGAGGGATCATCCAATCTGACAAGCAAATCATTGATTTTCTGATTCAAAATTCTTATTTCCTTTTTGATCCTCGAGTGGCACCTAACGTCAAATTGTTGCTTGATTTTGGAGTTACCCACTCGCAAATTCATATTTTGCTCAAGAGACGGCCTCTTGTACTCTGCTCTTCTAAATTGTTAGAGACGGTTCAGGAATTGAAGCAAATGGGCTTCGATGTTTCAAAGTCAACTTTCTGCATAGCATTGCTTGCCAAAAGGACTGTAAACAAAGCCAAATGGGAGGAGAAGTTTTTGGGTGGAGCAGGCAGGTTTCAAATCTCTGGATCTTGTCAGAGCTCCAGGGATTTTTCTACTGAGTCTCCAGAAGAGGATTGCTCCAAGGGCTTCAGTTTTGCAGTTTCTTACCTCAAAAGCTCCACCAATTTGTTCACTCTGGCCCTGTTCTACTTCTCTCTGCGATACCAACAAGTTCCAATTCTGCACTGTCACCTCGCACCTTTCGTGGAGTCATACCTCATCAACAACTGTGGCTTCTCCCAAGAAAAAGCTCTCAAAGCTTCCCTCAAGCTCCGTTTACGCCAACCCCAGAAGCCCGATTCAATTTTCTCCTTCTTCCGTAACCACGGTTTCTCCGACTCTCAAATATGCAAAATCCTCCAAAGGGAACTCCAGTTACTTTCCTGCGACACCCAAAAGGTATTGTTGCCAAAGTTCGAATTTTTACGTTCAAAAGGTGTATCTTCCCTAGACATTGTTCGCATGGTAGATGCGAGCCCTTCATTCCTTAAAAGAAGCTTGGAGAATCATATAATCCCAGCGTATGAACATCTAAGAGGGTTCCATGAATCTGACGAGCAAGTAATTGAACTTCTGATTCGAAATCCTTCTTTCCTGTATGATGGTCGAGTGCCATCTAACTTCAAATTGTTGCTTGATTTTGGAGTTACCCACTCAAACATTGATATTTTGCTCAAGAGATGGCATAATATACTCTGCTCTAGTAACTTGTCAAAGACGGTTCAGGAATTGAAGCAAATGGGCTTCGATGTTTCAACTTCAACTTTCTGCATAGCATTGCTTGCCAAAAGGACTGTAAACAAAACCAAATGGGAAGAGAAGATTGACACTTTTAAGAAGTGGGGATGGTCCCGAGAACAAATTCTTCTAGCTTTTAGGAGGCAGCCTTATATTATGTTGTCATCCCCTGATAAAATTAATGCAGTGTTTAGTTTTTGGGTGGAGCAGGCAGGTTTCAAATCTCTGGATCTTGTCAGAGCTCCAGGAATTTTTCAACTGAGTCTCCAGAAGAGGATTGCTCCAAGGGCTTCAGTTTTGCAGTTTCTTACCTCAAAAGGTCTGCTACGGAAGGATGCAAGTCTAAGTCGACCATTTATTCTGACTGAGACGTTGTTCCTGGAAAAAGAAAAACACGTCTCATCTTTTGAAAAGGCTTATCTCATGGGCTCAAGCTGTCCAGAGGAAACATCTAGTATACCATGGCCATATCAGGGGACTGGGAGGATGCTAGCATCTGCATCTGGCAGTTGGTTAACATATGAAAGTAAAATCTGGAAGCTAGGATTGGATGGTGAAATGTAA 2067 0.4315 MLKLHAHRTIVCAKAFTFTTLKRFPIVQHQIFKFDFCTTTSHPHSFAVSYLVNNCGFSLENALKASPKLRFRDPQKPDSVFCFFRSHGFSDSQICIILQKELQFLSCKPQKVLLPKFEFLRSKGASSLDIVRMVTANPSFLKRSLENHIIPAYEFVRGIIQSDKQIIDFLIQNSYFLFDPRVAPNVKLLLDFGVTHSQIHILLKRRPLVLCSSKLLETVQELKQMGFDVSKSTFCIALLAKRTVNKAKWEEKFLGGAGRFQISGSCQSSRDFSTESPEEDCSKGFSFAVSYLKSSTNLFTLALFYFSLRYQQVPILHCHLAPFVESYLINNCGFSQEKALKASLKLRLRQPQKPDSIFSFFRNHGFSDSQICKILQRELQLLSCDTQKVLLPKFEFLRSKGVSSLDIVRMVDASPSFLKRSLENHIIPAYEHLRGFHESDEQVIELLIRNPSFLYDGRVPSNFKLLLDFGVTHSNIDILLKRWHNILCSSNLSKTVQELKQMGFDVSTSTFCIALLAKRTVNKTKWEEKIDTFKKWGWSREQILLAFRRQPYIMLSSPDKINAVFSFWVEQAGFKSLDLVRAPGIFQLSLQKRIAPRASVLQFLTSKGLLRKDASLSRPFILTETLFLEKEKHVSSFEKAYLMGSSCPEETSSIPWPYQGTGRMLASASGSWLTYESKIWKLGLDGEM 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02790 688 PANTHER CGI-12 PROTEIN-RELATED 37 253 IPR003690 GO:0003690|GO:0006355
Cca11g02790 688 PANTHER CGI-12 PROTEIN-RELATED 314 639 IPR003690 GO:0003690|GO:0006355
Cca11g02790 688 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Cca11g02790 688 SMART mt_12 167 195 IPR003690 GO:0003690|GO:0006355
Cca11g02790 688 SMART mt_12 544 575 IPR003690 GO:0003690|GO:0006355
Cca11g02790 688 SMART mt_12 372 403 IPR003690 GO:0003690|GO:0006355
Cca11g02790 688 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Cca11g02790 688 SMART mt_12 200 228 IPR003690 GO:0003690|GO:0006355
Cca11g02790 688 SMART mt_12 576 610 IPR003690 GO:0003690|GO:0006355
Cca11g02790 688 SMART mt_12 408 439 IPR003690 GO:0003690|GO:0006355
Cca11g02790 688 SMART mt_12 477 505 IPR003690 GO:0003690|GO:0006355
Cca11g02790 688 Gene3D Transcription termination factor 3, mitochondrial 439 640 IPR038538 -
Cca11g02790 688 Gene3D Transcription termination factor 3, mitochondrial 52 243 IPR038538 -
Cca11g02790 688 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 314 639 - -
Cca11g02790 688 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 37 253 - -
Cca11g02790 688 Pfam mTERF 359 507 IPR003690 GO:0003690|GO:0006355
Cca11g02790 688 Pfam mTERF 83 230 IPR003690 GO:0003690|GO:0006355
Cca11g02790 688 Pfam mTERF 462 627 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02790 Cca-Chr11 55238512 55244766 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca11g02790 mTERF 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02790 K15032 - gmx:102667698 425.246