Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02789 ATGATTCTGTTTGACGCCCTGAGGCGGAGGCTGAGACCTCTTGTCTACCTCACCACTCTGTCACCATTACCAAACCCCAAATGCATGCTCTTCTTCTCAACGGATCCCGAATCCTTCACCATTTCCTACCTCACCCACTCCTGCGGATTCTCCCCCGACGCCGCCCTTAAGGCCTCCAGACGCCTCCGTCTGCACTCCCCCCACAAGCCCGACGCCGTCATCTCCTTCTTCCGCTCGCACGGCTTCTCCCCTTCCCAAATCAGCCGCGTCTTGACCCGCGCCCCCGACCTCATCACCTGCAACCCCACCCTCCGGCTTCTCCCCAAGTTCGACTTCCTCTCCTCCAAAGGCGCCTCCCCCGAAGACATCATCCTCATCGTCACCAAGAGCCCCCGCATCCTCCGCTACAGCCTCCGCAACTACATCACCCCCTCCTTCCACCTCCTCCGAACTTTCTGCCACTCCGATCGCAAAGTCCTCTCCGTCCTCCTCGCCTGCCCCAACTTCATCGGCGACTACCGCGTCTCCTCCAACATCAACACTCTCCAACTCGCCGGAGTCACGCCTTCCGCCATTCGCTACCTTCTCTCCACCAGACCCTCCGTCCTCTGCTCCGATTTGAAAAACGTAATCCAGGAAGTCAACCAATTAGGCTTTGACCCTTCCAAAGTCAGCTTCACTGTCGCCTTGCTCGCCAAAAGGGCTATCTCCAAACCCCTCTGGGACGCCAAAGTTGACGCCTTTAAGAGATGGGGTTGGTCTGAGGACGAGGTTTTCGCTGCCTTTAAGAATCAGCCCAGCGTCATGCTGCGATCCATGGAGAAGCTCAATGCGGTTTTGGGGTTTTGGGTGGGTCGACTTGGCTGGGACCATTCCGCGCTTGTTGCGTCGCCCACGCTGTTTGCGTATAGTTTGGAGAAAAGGGTTATTCCCAGGGCTTTGGTTGTGCAGCATCTTATGTCCAAAGGTTTGTTGAAGAAGGGTGCTAGCTTGGTTACACCGTTTTCCATGCTTGATGAGGCCTTCCTGCAAAAGTATGTGAAATGTTTCAAGGAGGAAACATCCACACTTCTAGAGCTGTATCGGGGGAAGGGAACTTGCTAG 1104 0.5589 MILFDALRRRLRPLVYLTTLSPLPNPKCMLFFSTDPESFTISYLTHSCGFSPDAALKASRRLRLHSPHKPDAVISFFRSHGFSPSQISRVLTRAPDLITCNPTLRLLPKFDFLSSKGASPEDIILIVTKSPRILRYSLRNYITPSFHLLRTFCHSDRKVLSVLLACPNFIGDYRVSSNINTLQLAGVTPSAIRYLLSTRPSVLCSDLKNVIQEVNQLGFDPSKVSFTVALLAKRAISKPLWDAKVDAFKRWGWSEDEVFAAFKNQPSVMLRSMEKLNAVLGFWVGRLGWDHSALVASPTLFAYSLEKRVIPRALVVQHLMSKGLLKKGASLVTPFSMLDEAFLQKYVKCFKEETSTLLELYRGKGTC 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02789 367 Gene3D Transcription termination factor 3, mitochondrial 53 174 IPR038538 -
Cca11g02789 367 Gene3D Transcription termination factor 3, mitochondrial 175 359 IPR038538 -
Cca11g02789 367 SMART mt_12 124 156 IPR003690 GO:0003690|GO:0006355
Cca11g02789 367 SMART mt_12 259 290 IPR003690 GO:0003690|GO:0006355
Cca11g02789 367 SMART mt_12 193 220 IPR003690 GO:0003690|GO:0006355
Cca11g02789 367 SMART mt_12 291 325 IPR003690 GO:0003690|GO:0006355
Cca11g02789 367 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Cca11g02789 367 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 24 364 - -
Cca11g02789 367 Pfam mTERF 243 342 IPR003690 GO:0003690|GO:0006355
Cca11g02789 367 Pfam mTERF 74 220 IPR003690 GO:0003690|GO:0006355
Cca11g02789 367 PANTHER CGI-12 PROTEIN-RELATED 24 364 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02789 Cca-Chr11 55234249 55236145 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca11g02789 mTERF 5.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02789 K15032 - gmx:102666622 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02789 11 55234249 55236145 Cca08g01655 08 48156033 48161873 PCT