Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02779 ATGGTTACTCCTGATGGAGAACTTGAAATAAGTTTTGGCTATAAATGCAATAGCAATAAGGATAGAGACATTCCTTGTGAGGTTGTCAGTGGCTACAAAATCCTTCCTGGAGTACGTAGAACAAGTAGTTTTTCTTGCTTGTCAGGTGCAGCCTTAAGTGCAAATGCCACACTTGCCAATACAAATATCTGCAATGGTAAGATAGGAGAAGAAATCCTTCCAAGTTGGGACTCTCCTAATTCATTTCGAAAGGTAACCTCTTCGCCAAGTCTTTCAAAGTTGGACATACTATCTTCTTCCCTCCCGAGTAGTTTGTCATACCTTAGCTGCAGTCCTTCTACTACAAGTGATATCCTTGAATATGACTGTTGCACACTAAAATCCATGAGTGATCCTTCCAGAAGTGAAGGTTTTCTTAATTCTACGGAAGTTCAAGTGGCAGGAGGAGCTGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGATGGCTCTTCTGTGCAATTTATGACGGCTTTAATGGAAGAGATGCAGCTGACTTTCTGGCTGGTACCCTGTATGACACCATCATATCTTACTTTAATAAGTTAATTGAGGATTTGGAGCCGAGTTCCATCGAAGCTTATAATGATGGGGGTTTGGGTGGATCCCTGCAATGTAATAAGTTGGATAATAGACTTATTTATCACGAAGATCAATCTCTGTCAAAATTTAAGGGAATAAATGATTCTAGTCATGGATGTTTTGTAGAGGATAGTCCATCTACCAAGTTAGAAGCATCATGTGATTCATTTTCACATGGGGTACTTGATATCCTTCAACGTGCTGTTAGTCAGGCTGAGAATGATTTCTTGTACATGGTTGAGCAAGAAATGGAGGAACGTCCTGATTTAGTTTCTATTGGATCTTGTGTTTTACTTGTGCTTCTTCATGGTAATGATTTATATACACTTAATCTAGGTGACAGCAGAGCAGTATTGGCAACATGCACTACAGTTGACCGTATGAATAAGAGTGAGAGACTCAAGGCTATACAGCTTACAGATAATCATACTGTTGACAATGAAGTTGAAAGGGCAAGACTTCTGGCTGATCATCCTGATGATCCCAAGATCGTTATAGCAGGAAAAGTGAAAGGGAAACTGAAGGTTACTCGCGCTTTTGGAGTTGGCTACTTGAAAAAGAAAAATCTGAATGAGGCTTTGATGGGAATCCTTCGAGTTCGTGATCTTAAAAGCCCACCATACATATCCACTCAACCATCACTGAATGTCCACAGAATCTCAAGTTCTGATCAATTTGTTATAGTGGGGAGTGATGGTTTATTTGACTTCTTCAGCAATGATGAGGCTGTAAAGCTTGTAGAGTCTTATATCTTGAGCAATCCTTTGGGTGATCCAGCAAAGTTTCTCATAGAGCAGCTTGTAGCTAGAGCAGCTGATTCTGCCGGTCTGAGCATGGAAGAGTTGATGAATATACCAGCTGGGAGGAGAAGGAAGTACCATGACGACGTGACCGTAATTGTGATCTTGCTTGGGATGAATCAGAGGACTTCAAAGGCATCAACTTGCATTTAA 1584 0.4059 MVTPDGELEISFGYKCNSNKDRDIPCEVVSGYKILPGVRRTSSFSCLSGAALSANATLANTNICNGKIGEEILPSWDSPNSFRKVTSSPSLSKLDILSSSLPSSLSYLSCSPSTTSDILEYDCCTLKSMSDPSRSEGFLNSTEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTIISYFNKLIEDLEPSSIEAYNDGGLGGSLQCNKLDNRLIYHEDQSLSKFKGINDSSHGCFVEDSPSTKLEASCDSFSHGVLDILQRAVSQAENDFLYMVEQEMEERPDLVSIGSCVLLVLLHGNDLYTLNLGDSRAVLATCTTVDRMNKSERLKAIQLTDNHTVDNEVERARLLADHPDDPKIVIAGKVKGKLKVTRAFGVGYLKKKNLNEALMGILRVRDLKSPPYISTQPSLNVHRISSSDQFVIVGSDGLFDFFSNDEAVKLVESYILSNPLGDPAKFLIEQLVARAADSAGLSMEELMNIPAGRRRKYHDDVTVIVILLGMNQRTSKASTCI 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02779 527 Gene3D - 109 523 IPR036457 -
Cca11g02779 527 PANTHER PROTEIN PHOSPHATASE 2C 2 526 IPR015655 GO:0004722|GO:0006470
Cca11g02779 527 CDD PP2Cc 151 514 IPR001932 -
Cca11g02779 527 SMART PP2C_4 129 512 IPR001932 -
Cca11g02779 527 Pfam Protein phosphatase 2C 232 478 IPR001932 -
Cca11g02779 527 SUPERFAMILY PP2C-like 152 515 IPR036457 -
Cca11g02779 527 ProSiteProfiles PPM-type phosphatase domain profile. 138 514 IPR001932 -
Cca11g02779 527 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 2 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02779 Cca-Chr11 55141696 55144760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02779 4 527 PP2C-type Phosphatase Gene Family AT3G16560 62.193 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02779 - - gmx:100808304 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02779 11 55141696 55144760 Cca11g02779 11 55141696 55144760 ECH
Cca11g02779 11 55141696 55144760 Cca08g01665 08 48355792 48363266 PCT