Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02776 ATGCAGAACGAGGAGGGAAAGCTCACTGAACTATACGTTCCTAGGAAATGCTCTGCCACTAATAGATTGATAACTGCAAAGGACCATGCCTCAGTTCAGATGAACATTGGCCATTTGGATGAGAATGGTGTCTTTAATGGTCATTTTTCCACATTTGCCCTCTCTGGTTTCGTCCGAGCACAGGGAGATGCTGACAGTGCACTAGATCGGTTGTGGCAGAAGAAGAAAGCAGAAGTTAAGCAACAattttggtgggggaaaagatcagcggagCGGGGGTTGGATGACGGAGGCGCGGGGTTATACGCGAGTCTTCCCTTTGTGAATGGAAGGAGAGGGTGTGACGCCGTTTCCGAAAGGCTCGACAAAGGAGGAAGAGCCCTTGGGGAGGGGGAAGGGGATGGAGGAAGGGTCGCGCCATCGCCTCGGACGTCTTCCTCACTGACGACGGGGTCATCTGGAGGGTTTAGGGGCGGGGTGAGgcttcttgaagcaaccgttccttatcagattttggtaggggaagagatcagcgaagCAGGGGTTGGACGACGGAGGCATGGGGTTGGGCGCGAGTCTTCCCTTTGTGAATGGAAGGAAAGGGCGCAACGCCGTGTTCAAAAGGCTCGACAGAGGAGGAAAAGCCCTCGAGAAGGGGGGAGGGAGGAAGTGCCGTCGCCATCGCCTCGGACGTCTTCTCACTGA 705 0.4879 MQNEEGKLTELYVPRKCSATNRLITAKDHASVQMNIGHLDENGVFNGHFSTFALSGFVRAQGDADSALDRLWQKKKAEVKQQFWWGKRSAERGLDDGGAGLYASLPFVNGRRGCDAVSERLDKGGRALGEGEGDGGRVAPSPRTSSSLTTGSSGGFRGGVRLLEATVPYQILVGEEISEAGVGRRRHGVGRESSLCEWKERAQRRVQKARQRRKSPREGGREEVPSPSPRTSSH 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02776 234 MobiDBLite consensus disorder prediction 181 234 - -
Cca11g02776 234 MobiDBLite consensus disorder prediction 124 157 - -
Cca11g02776 234 MobiDBLite consensus disorder prediction 181 204 - -
Cca11g02776 234 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Cca11g02776 234 Gene3D - 1 82 IPR038579 -
Cca11g02776 234 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Cca11g02776 234 MobiDBLite consensus disorder prediction 140 154 - -
Cca11g02776 234 Pfam Ribosomal protein S21e 1 76 IPR001931 GO:0003735|GO:0005840|GO:0006412
Cca11g02776 234 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02776 Cca-Chr11 55126286 55128643 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02776 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 80.247 1.56e-46 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02776 K02971 - gmx:100499937 158.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02776 11 55126286 55128643 Cca11g02776 11 55126286 55128643 ECH