Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02774 ATGAATGCAGGGAATCGCTTATCCGACCTCTCTTCACCTCCTTCTTCCGCTTCGCCGGGAATTGCTCGCTTCGACTCTGACGGTCTCCAAATTCATCACCAATCTCACCAGATTCCCCTCAGTGTCCATCCTCGAACTGTTCAGTTGTTCAAGGTGAGTCCTGTTCTATCGGTGTGCGTGGTGGAAGGATCTGATGCTGGCAAAAAGACATTGTATTCCAGGGCAGTCACTATCCAGTTTAGAAATGAGGAGGAGAGTGCGGCCTTCCATTGTGTAGTCCAACAGTGGAAGAAGGAAGTCAATACTCAAGAAGGCAACGAACGAATTGGAACAATTACAGCATCTAAAAGCAAATTTGATGAAAAAATAGAATCATCATCTGCAAAAATGTATTTCCATTATTATGGACAACTTCTGCATCAGCAAAATATGTTGCAGGACTATGTGCGGACAGGAACCTATCATGCTGCTGTTATTGAGAACCGTGCTGATTTCATTGGTCGTGTTGTGGTTGATGTGGGTGCTGGTAGCGGTATTTTGTCATTATTTGCTGCTCAGGCTGGTGCAAAACATGTTTATGCTGTGGAAGCATCTGAAATGGCAGAATATGCACGGAAACTTATAGCTGGAAACCCAACACTGGCTCAACGAATTACAGTGATCAAAGGCAAAGTTGAGGATGTTGAATTGCCAGAAAAAGCAGATATTTTGATCTCTGAGCCCATGGGCACCTTGTTAGTCAATGAAAGAATGCTGGAGTCTTATGTCATTGCCAGAGATAGGTTTCTCAGTCCTACTGGGAAAATGTTTCCAGCAGTGGGAAGGATTCACATGGCACCTTTCACTGATGAATATTTGTTTATTGAAATTGCCAATAAGGCCCTGTTTTGGCAGCAGCAAAACTATTATGGTGTTGATTTAACACCCCTACATGGTACTGCATTTCAAGGATACTTTTCTCAGCCTGTGGTGGATGCTTTTGATCCAAGATTGTTAATAGCTCCTCCAATGTTCCATGTGATAGACTTCACCAAAATAAAGGAGGAAGAGCTGTATGAAATTGATATTCCTCTGAGATTCATAGCGTCTATGGGCACTAGAGTTCATGGGTTGGCCTGTTGGTTTGACGTGCTGTTCAATGGAAGTACTGTGCAGAGGTGGCTTACCACTGCTCCTGGGTCACCGACAACCCATTGGTACCAGTTACGCTGTGTTCTCTCTCAGCCAATTTATGTCATGGCAGGACAAGAAATTACTGGAAGGCTTCACTTGATTGCCCACAACGCACAGAGTTACACAATTTATTTAACGTTGTCAGCTAAAATGTGGGGTCCTGGTGCTGAACAAGGAGGAATTCTTCAAACATCATCATGTAAACTTGATCTGAAGGAACCTTACTATAGAATGTCTCAACCGCAAGCTTATGCATTAGCTCAAGATCAGCAGCAACCTCAACCACTTATACAAACACAGGATATACATATTCAATCTCAGGATTTGGATGAAGCCGAAATAGTGCAACAGCCTTCGCCTAATTCATGTGCTCAGATTGATTCACTGATGCAGAATGAATTTACTTAG 1581 0.4314 MNAGNRLSDLSSPPSSASPGIARFDSDGLQIHHQSHQIPLSVHPRTVQLFKVSPVLSVCVVEGSDAGKKTLYSRAVTIQFRNEEESAAFHCVVQQWKKEVNTQEGNERIGTITASKSKFDEKIESSSAKMYFHYYGQLLHQQNMLQDYVRTGTYHAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPTLAQRITVIKGKVEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLSPTGKMFPAVGRIHMAPFTDEYLFIEIANKALFWQQQNYYGVDLTPLHGTAFQGYFSQPVVDAFDPRLLIAPPMFHVIDFTKIKEEELYEIDIPLRFIASMGTRVHGLACWFDVLFNGSTVQRWLTTAPGSPTTHWYQLRCVLSQPIYVMAGQEITGRLHLIAHNAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYALAQDQQQPQPLIQTQDIHIQSQDLDEAEIVQQPSPNSCAQIDSLMQNEFT 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02774 526 CDD AdoMet_MTases 170 270 - -
Cca11g02774 526 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 134 445 IPR029063 -
Cca11g02774 526 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 124 439 IPR025799 GO:0016274|GO:0018216
Cca11g02774 526 MobiDBLite consensus disorder prediction 1 24 - -
Cca11g02774 526 MobiDBLite consensus disorder prediction 1 19 - -
Cca11g02774 526 Pfam Ribosomal protein L11 methyltransferase (PrmA) 167 240 - -
Cca11g02774 526 PANTHER HISTONE-ARGININE METHYLTRANSFERASE 1.4-RELATED 17 479 - -
Cca11g02774 526 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 17 479 IPR025799 GO:0016274|GO:0018216
Cca11g02774 526 Gene3D Vaccinia Virus protein VP39 110 271 IPR029063 -
Cca11g02774 526 Gene3D - 273 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02774 Cca-Chr11 55103947 55115549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02774 131 421 C2H2 Transcription Factor Family AT3G12270 33.657 6.08e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02774 K05931 - gmx:100780736 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02774 11 55103947 55115549 Cca11g02774 11 55103947 55115549 ECH
Cca11g02774 11 55103947 55115549 Cca08g01668 08 48398437 48408737 PCT