LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g02771	ATGGCGAGTGCGCGTTACTCTCCGTTCTCTCTCCTCACGCCTCACGCTAACGGACCAACCCCTCCTCGCATTCCACTTTCTTCAAAACGGCACAGGAAAAACCATTTGCGGCCCAAAATTCTGAAAACCCTAACTAAACCCTATCCACCCACTCTTCCTCTTCTACCGTCACCGCCACAACAGCCTGTAATCTCCCCTCAGGAAAACAACAACCTCTACGTCGAGATTGCCGCCGGCGAGACACTTGCCGGAGACATTGTGGATAATTTGGGAGAGGTACAAGTCTCCGAGGCCACCACAATCGCGGATAATTTTGAAGAGTTACAAGTCTCCGACGCCACCGCGAAGGAAAATGGTGTGTTTGAGAATGTTTCCGCGGTAGATATATTCAAATACGGTGGTATGTATTTTCTTGGGTTTTTTGTGTTGCAGACGGTTTACACTGTTTGGGTCGCGGGAAATTACAATTCCACCCAGAAAGATGGGGATTTGGAGGTCGATGGAAGGGACAACGAGAATGGGAAAACTGTGTCATTGCCGGTTAATGGTGCTAGCAATGTTTTTGGTGTGGAGGACCAACTTGACATGGAGAAGAAAATTGAAGAAATTAGGTTAATGGCGAGGGAAGCACGGAGAATTGAACTTGGTATTGAGAAGGAGATTGGTGAGCGCTTGTTAAAGCTGCAGAATAGGATAAATGGTAGTACTAAGGATATTTCAGCAGCGTTACAGCAGATTAATACTCGTCGGAATCCTGCTGCTGGAGTGGATAGGGGTGTTATTAAGAATGTGAGTAAGGGAAATGAGGCAATGGTGTTTAAGAAGAAGTTTAAGTTTAAAAGCCCTTCAACTAAGGCTACAAAGACTCCCAAGGGGTTTCCAGGGACCCGAGATTGGAGGGCATCGAATGCAAAGAAGAAGAGGGATTCAGCTGGTAAGGATTATGGAAGTGATGCTGCTGATCCTGATAACGCACAAGTGTCATATGAAGATAAACAGGTGAATCAACAAGATGATGGAAGGCAGAAGAGTATTTCTAGTGTTCCTACGGAAGGAGGAAATTTCGTTGATGACGAGTCCAAGGCGATTCGAAATCATGGGAAAAATTTGAAGGAAAAGAAACCAAATATGAAGACAGGGGTTGGAGTTAAAAATAGAAGCGGTGACAATGGTGGTGTCCAGGAGACTAATTTTGGGATGTCTTCACTTGAAGTAACACAGCCAAGAAAATTAAGAGATTCTAGTATTCAAAACTCTAAGGGTTTTGTGGAAGAAAGCCAGGAAACAATTGTTGAGAACGATGGTGTGCACAGTATAAATGGTGGTTCAAGACATGGGTTAGCTAAAAAAAGTTCAGCAGCTAACAGAGTTGAAGTTAAGAAAGCAAATACCAAGACTGGTATGTGGTGGCTGAACCTCCGTTATGTTTTTGTCATTCTCATGCAAAGAGATTCTGACGAAGGATCAACAGGTCTCTATAGCTTTAAGTTCTCTTCTAAGGAGCAGGACCTAAGTGATGATTCCTATACTGTTGCTTTTGAGGATCATGCTGATGCCAACAACTTCTGTTTTCTATTGGAATCCTTTTTTAAAGATTTGGGGTCTTTTAGTGCTGATGCAGTTCCAATGTCAATACAAGAACTGAATGAAGAGATAATATCACGTGCCAAGAAAGTCGTAGTTGTGAAAAAGAGGCAGCTTCAACTCTATGCTGGACAACCGCTTGCAGATGTTGAAATGGCCTTATGCTCTATAATAGAACAGGATCAAAATGCGCCAGAGATTCACAGCACCgaagaagaagaagaagaagaagaagaagaagaagaagaagTGAAGCATGGAGGAGCCTCACACTCCGACGGCGCCACCGCCGAGTTGCGCGGCGTCGATTGCAACCTCGCTTCCCTCTGCGAGCATGTCCAAATCGAAGGCTTCAATTCCGGTTCCTTCTCCGACATCGTCGTCAATGCCATGGGTTCCACTTATCGCCTCCATCGTCTTATCCTCTCCCGCAGTTCGTATTTCAGGAACATGCTTCATGGGCCTTGGAAAGAAGCCAGTGCTCCTGTTGTGACTCTGCATGTTGATGATAAGAATGTAAATGATGAGGCTATTGCAATGGCTTTGGCATATTTGTATGGACACCACCCTAAGCTTAATGATAACAATGCATTTCGTGTTCTTGCTGCTGCTTCATTTCTTGACCTTCAGGATTTATGTGGAATTTGCACGGATTTCATTATATCTGAGTTGTGGACTTCAAACTTCTTGGCTTATCAGGTGTTTGCGGAGAACCAAGACTATGGCATTCATGGGGAGCGTGTTAGAACTGCTTGCTGGGGCTACCTATGTCAAAGTGGTGGCATGGAATTAAAAGAGGTGCTTCCTAAACTTTCATCTCAAACATTACATGCATTACTGACTTCTAATGATCTGTGGATACCCAATGAAGAGAAACGGTTTGAATTGGCTTTACACACATTCCTGGCAAAAGGCGCTCACTGCAAGGTCGAGCATTCTACACATGGGATTTCTGGTTCTGAGTCTGCGACTGATTCTGGTAGCACCAAGGGAAAAAGTGTAACTGATAGCTGCACTAATAAAAGGTTGGAAACTGACATGGGGAAAATGAGTCTTAAAAGTGATCCAAAGGACCTTAGCACTCCTAATCTTCTAGTTGAGCTTGCAGATTCAGTGGTGGCAGACTTCAATGATGGGGTTTCTGTTCCAAATGAACGGGTTCTACAAGCTTCATATGTCAATTCACCAAACCAGAATCCAAGATATTCTTGTGACATGGAAGGACCATCAATGGGTAGTTCACTGCCTGATGCGGATGGGATGAGATCACCATGTTATGTTGATATGCCTCTTGGTGCGGGAGCAACTAGTATGGGAGCCACTGGAGTGGGTATTGAAGGGCCATCTGAAGAAGGGCCTTGCTACCATTTGGAGAATAATAGTTGGTTAGTTAGGGATCAATCAAGGCATTGTTTTTCTTCAAATTCTTGTAATGAGACCACATCCAATGATTGGGGAAGATACGGAACACCTTTATTTTCATGGAATGGCCAGTTTGTTGGCAGAAGACAGCTTAAAGCTCACCCCAGAGGAAACTACAGAGGTCACGGAGATGAATATGATGCATTTTTTAATATATTTGAAGGGGGTTCCCTTTTATATTGCAATATGTCCTTTGATGCACTTCTAAATGTCAGAAAGCAACTTGAAGAATTAGGTTTCCCTTGCAAAGCTGTAAATGATGGTCTTTGGCTGCAGATGCTTCTTAGTCAGAGGGTACAAGAAATTGCTGCTGATACATGCAAAGTTTGTTCCCTCATGAGTATGGCTTGCACTTGCCAGAAGCAATTTGCATTTTCCCATGGAGCTTCTACCACAGGATCTTACATTCAAGAACATAATCAGAACATTATGCCTGGCAATGTGGGAAATATATATGTTGCTGAATCTTCCCCAGGTGAAAGAAATGGCCTTTTTAGGCCTGTAAGAGTACATGTTAGAGGTGCTATTGATGGTCTTGCGGGTATTGGCCGTGGAACTACATTTGTTCCAGCATCTGCTTCTCCTCCTACACGTTTTGTCTTTTCTCGTGTGCCATTTGGTGTTGGCAACAGAAACTATCCTCAGTCTGCAGCCAATGATGATTCAGAGACACGGGCTGACCACAATGGGGACCTATCTGGAGATGGGTTAACAGCTTTAGTTGGGTTGAGCCAGGGAGGGACAAATGGAACAAATGTACACACAGAGCTAACACAAAGGGGATATGAAATGGGCATGCAAAGCAGCATGTCTGGAACTACTGCTGGAGGTGCAAGTACTGGTGGCATTCCCATGCAAATGTTAGAGACACCAGAACATACCATTGGTATAGAATGGGACAATGTGAACAGTTCTTCTATATCACTGGATTTGAAAACACCTTTAAGCCATTTCCCCCCTTTTCGCTTTGGTGTATGTTTCGAGGATGTGCACAGGCTTGGTGATGGCCAGGTCAAGCATTCTCCAGAAGTTTTCTATGCTGGTTCTTTGTGGAAGGTCAGTGTACAAGCTTTTAATGATGAAGATCCCCAGGGAAGGCGTACCCTTGGGTTGTTTCTTCACCGTCGGAAGGCAGAGATAATTGATATACATAGAAAGGTACATATGTATGTTGACTCACGTGAAAAGGTGACTGCACGCTACCAGTTGACTGTCCCATTCAAGAGGGAAATGATGGTGTTTGGAAGCTTTAAACAAACAGGCACTCTTCTACCTAAAGCTCCTAAAGGATGGGGTTGGCGAACTGCTCTGCTATTTGATGAGCTTGCTGATCTTCTCCAAAATGGCGCCCTAAGGGTCATTGCTGTAGTGCAGCTTGTTTGA	4389	0.4377	MASARYSPFSLLTPHANGPTPPRIPLSSKRHRKNHLRPKILKTLTKPYPPTLPLLPSPPQQPVISPQENNNLYVEIAAGETLAGDIVDNLGEVQVSEATTIADNFEELQVSDATAKENGVFENVSAVDIFKYGGMYFLGFFVLQTVYTVWVAGNYNSTQKDGDLEVDGRDNENGKTVSLPVNGASNVFGVEDQLDMEKKIEEIRLMAREARRIELGIEKEIGERLLKLQNRINGSTKDISAALQQINTRRNPAAGVDRGVIKNVSKGNEAMVFKKKFKFKSPSTKATKTPKGFPGTRDWRASNAKKKRDSAGKDYGSDAADPDNAQVSYEDKQVNQQDDGRQKSISSVPTEGGNFVDDESKAIRNHGKNLKEKKPNMKTGVGVKNRSGDNGGVQETNFGMSSLEVTQPRKLRDSSIQNSKGFVEESQETIVENDGVHSINGGSRHGLAKKSSAANRVEVKKANTKTGMWWLNLRYVFVILMQRDSDEGSTGLYSFKFSSKEQDLSDDSYTVAFEDHADANNFCFLLESFFKDLGSFSADAVPMSIQELNEEIISRAKKVVVVKKRQLQLYAGQPLADVEMALCSIIEQDQNAPEIHSTEEEEEEEEEEEEEVKHGGASHSDGATAELRGVDCNLASLCEHVQIEGFNSGSFSDIVVNAMGSTYRLHRLILSRSSYFRNMLHGPWKEASAPVVTLHVDDKNVNDEAIAMALAYLYGHHPKLNDNNAFRVLAAASFLDLQDLCGICTDFIISELWTSNFLAYQVFAENQDYGIHGERVRTACWGYLCQSGGMELKEVLPKLSSQTLHALLTSNDLWIPNEEKRFELALHTFLAKGAHCKVEHSTHGISGSESATDSGSTKGKSVTDSCTNKRLETDMGKMSLKSDPKDLSTPNLLVELADSVVADFNDGVSVPNERVLQASYVNSPNQNPRYSCDMEGPSMGSSLPDADGMRSPCYVDMPLGAGATSMGATGVGIEGPSEEGPCYHLENNSWLVRDQSRHCFSSNSCNETTSNDWGRYGTPLFSWNGQFVGRRQLKAHPRGNYRGHGDEYDAFFNIFEGGSLLYCNMSFDALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQEIAADTCKVCSLMSMACTCQKQFAFSHGASTTGSYIQEHNQNIMPGNVGNIYVAESSPGERNGLFRPVRVHVRGAIDGLAGIGRGTTFVPASASPPTRFVFSRVPFGVGNRNYPQSAANDDSETRADHNGDLSGDGLTALVGLSQGGTNGTNVHTELTQRGYEMGMQSSMSGTTAGGASTGGIPMQMLETPEHTIGIEWDNVNSSSISLDLKTPLSHFPPFRFGVCFEDVHRLGDGQVKHSPEVFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEIIDIHRKVHMYVDSREKVTARYQLTVPFKREMMVFGSFKQTGTLLPKAPKGWGWRTALLFDELADLLQNGALRVIAVVQLV	1462

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca11g02771	1462	MobiDBLite	consensus disorder prediction	328	353	-	-
	Cca11g02771	1462	Pfam	BTB/POZ domain	646	750	IPR000210	GO:0005515
	Cca11g02771	1462	SMART	BTB_4	652	752	IPR000210	GO:0005515
	Cca11g02771	1462	MobiDBLite	consensus disorder prediction	1	35	-	-
	Cca11g02771	1462	Gene3D	Potassium Channel Kv1.1; Chain A	626	785	IPR011333	-
	Cca11g02771	1462	SUPERFAMILY	POZ domain	646	750	IPR011333	-
	Cca11g02771	1462	MobiDBLite	consensus disorder prediction	281	454	-	-
	Cca11g02771	1462	MobiDBLite	consensus disorder prediction	843	864	-	-
	Cca11g02771	1462	MobiDBLite	consensus disorder prediction	842	885	-	-
	Cca11g02771	1462	MobiDBLite	consensus disorder prediction	591	623	-	-
	Cca11g02771	1462	MobiDBLite	consensus disorder prediction	357	379	-	-
	Cca11g02771	1462	ProSiteProfiles	BTB domain profile.	652	722	IPR000210	GO:0005515
	Cca11g02771	1462	PANTHER	BTB/POZ DOMAIN-CONTAINING PROTEIN	605	1462	-	-
	Cca11g02771	1462	MobiDBLite	consensus disorder prediction	389	436	-	-
	Cca11g02771	1462	PANTHER	BTB/POZ DOMAIN-CONTAINING PROTEIN	605	1462	-	-
	Cca11g02771	1462	MobiDBLite	consensus disorder prediction	596	611	-	-
	Cca11g02771	1462	MobiDBLite	consensus disorder prediction	865	881	-	-
	Cca11g02771	1462	MobiDBLite	consensus disorder prediction	300	316	-	-

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	TRAF	Cca11g02771		BTB	3.5e-13	CL0033

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g02771	-		-	gmx:100806711	1601.26

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca11g02771	11	55063926	55074784	Cca11g02771	11	55063926	55074784	ECH