Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02753 ATGGAAAACAGCGAGGGAAGGGAAATCCAAAGCAAAGACTACGCGCTCAGCGGCAAGATAATGCTAATCGCCATCGTCCTTCTCTTCCTCGTCATCGTCATAATGCTTTGCCTCCACGTCTACGTccgctgccgcatcgtcgccgctcgccgccgccaatttatccggcgcgcgccccgccgccCGCAGTTCGTTTTCTACGTGGACCCGGCCGCCCGCATTGGGCTGACGACGCGCGGCCTCCACCCCTCGGTGATCTCGACGCTCCCCGTCTTCACGTTCTCCGAGGGCAGCGACGCCAGGGAGTGCTCGGTTTGCTTGTCGGAGTTGGAGGAGGGTGAAAGGGGTCGTGTTTTGCCCAAATGCAATCATACTTTTCATACGGACTGTATCGACATGTGGTTTCAGTCGCACGCCACGTGTCCTCTCTGCAGGGCCCCCGTGGAGGCCCAGCCCAAGGACCCTCTCCTTCTctctgcctctgcctctgcctctgcctctgGGCCTGGGCCCCAACAAGTGCTGGGGCCCAATTCTTCTTCTTCTTCCGAGTCCCCGGTGAGTCGGATACTATCGTTTAAGATAATTCTGAGCAGAGAGAAGAAGGAAAGCGCTTCCATCAGCGAGTTCGATGCGGAACGGGGAGAATGTGACTCGGCGAGTTTAACCGCTTCCCATTGA 681 0.4919 MENSEGREIQSKDYALSGKIMLIAIVLLFLVIVIMLCLHVYVRCRIVAARRRQFIRRAPRRPQFVFYVDPAARIGLTTRGLHPSVISTLPVFTFSEGSDARECSVCLSELEEGERGRVLPKCNHTFHTDCIDMWFQSHATCPLCRAPVEAQPKDPLLLSASASASASGPGPQQVLGPNSSSSSESPVSRILSFKIILSREKKESASISEFDAERGECDSASLTASH 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02753 226 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Cca11g02753 226 PANTHER RING-H2 FINGER PROTEIN ATL64 4 186 - -
Cca11g02753 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 151 IPR013083 -
Cca11g02753 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 4 186 - -
Cca11g02753 226 Pfam Ring finger domain 102 145 IPR001841 -
Cca11g02753 226 SUPERFAMILY RING/U-box 97 151 - -
Cca11g02753 226 MobiDBLite consensus disorder prediction 200 226 - -
Cca11g02753 226 MobiDBLite consensus disorder prediction 200 216 - -
Cca11g02753 226 CDD RING-H2_EL5_like 102 145 - -
Cca11g02753 226 MobiDBLite consensus disorder prediction 161 187 - -
Cca11g02753 226 SMART ring_2 103 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02753 Cca-Chr11 54904417 54905372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02753 11 206 Rapid Response to Elicitors AT3G16720 42.688 7.69e-48 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02753 - - ccaj:109809917 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02753 11 54904417 54905372 Cca11g02753 11 54904417 54905372 ECH
Cca11g02753 11 54904417 54905372 Cca08g01695 08 48717787 48718638 PCT