Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02752 ATGGCAGCTGGATTCGACAGCGTCCACGAGAGGAAGAAGAAGCTCGCCATTGTGAGCGTCTCTTCCCTCCTCCTCGTGGCCATGGTCGCCGCCGTCGCCGTCGGCATCAAAGATGCCGGCGTCGAAGAGGGCGACAGCGGGATCGTTAAATCTCAAAGAAACGTTCAAGCCATATGCCAGTCCACCGAGTACAAAGAAGCCTGCACCAAGAGTCTCGCCAACGCCCCAAACGACACCACCGACCTCAAGCAACTCATCATAACCTCCTTCAACGCCACCGCCGAGGAAATCAAAGCCAAAATAGAAAACTCAACGCTCTACCACGAGTTAGCCACCGACAACATGACCAAACAGGCCATGGACATTTGCAAAGAAGTACTCGGTTACGCCGTCGACGACATTCACCAATCCATTAACACTTTGAACGAGTTCGACATCAACAAGTTGAACGACTACGCCTATGACCTCAAGgtttggctctCGGGTACCCTGGCACATCAACAAACATGTCTGTCTGGGTTCGAGAACACGACGACCGACGCCGGCAAGACCATGAGTAAGGTTCTGAACGCGTCGTTGGAGATGAGCAACAACGCGTTGGACATAGTGAACAGTGTTTCATCAGTGTTCAAGGGTCTTAACTTGAGTGCCTTGACGGGCAGCAGGAAGCTTCTGGCGGATGGGATCCCTTCGTGGGTGAGTGAAGGGCAGAGGAGGCTATTGGAGAATGGTGAAGTTAAACCTAACGTGGTTGTGGCTCAGGATGGGAGTGGACAAGTGACCAAGATCCACGAGGCTCTTCAGATGGTTCCAAAGAAGAACAAGACGCCTTTCGTGATTTACGTCAAGGCCGGTGTCTACAAGGAGTATGTTAACTTGCACAAGCACATGTCCTACGTCACCATGATCGGAGATGGCCCCACCAAGACCATAATCAGCGGAGACAAAAACTACGTGGATGGCGTCCAGACCTACAACACGGCAACTGTGGGTATCAACGCACCTAACTTCATGGCGAAGAACATCGGGTTCGAGAACACGGCCGGAGCAGAGAAGCACCAAGCGGTGGCACTGAGAGTAACAGCAGACAAGGCAGTGTTCTACAACTGTGCCATGAACGGGTACCAAGACACTCTGTACACGCAGTCCCAGAGGCAGTTCTACCGCGAGTGCAGCATTTCGGGCACCATCGACTTCGTGTTCGGCGACGCCATCGCAGTGTTCCAGAAGTGCAAGCTGGTGGTGCGGAAGCCGATGGAGACCCAGCAATGCATGGTGACGGCGGGAGGAAGGTCGAAGGTGGACAGCCCGAGCGCACTGGTGTTCCAGAGCTGCAGCTTCACGGGGGAGGCGGATGTGATGGGCCTGAGCCCTAAGATCGCTTACCTCGGAAGGCCGTGGAGGGCTTACTCGAAGGTGGTGATCATGGACTCTGAGATCGCGGATATCTTTGTCCCTGAAGGGTACATGCCGTGGATGGGAAGCGCTTtcaaagagacgagcacctactacgagttcaacaacaagggtcctggtgctgtgactgttggtagaatcacgtggcCTGGCTTTAAGGTCATTAACGCTCTCGAGGCTGCCGATTACTACCCCGGCAGGTTCTTTGAGATCGCTAACTCCACTTCTCGTGATTCTTGGATCCTCCACTCTGGGGTACCCTACTCCCTTGGCCCTCTCAACTAA 1701 0.5144 MAAGFDSVHERKKKLAIVSVSSLLLVAMVAAVAVGIKDAGVEEGDSGIVKSQRNVQAICQSTEYKEACTKSLANAPNDTTDLKQLIITSFNATAEEIKAKIENSTLYHELATDNMTKQAMDICKEVLGYAVDDIHQSINTLNEFDINKLNDYAYDLKVWLSGTLAHQQTCLSGFENTTTDAGKTMSKVLNASLEMSNNALDIVNSVSSVFKGLNLSALTGSRKLLADGIPSWVSEGQRRLLENGEVKPNVVVAQDGSGQVTKIHEALQMVPKKNKTPFVIYVKAGVYKEYVNLHKHMSYVTMIGDGPTKTIISGDKNYVDGVQTYNTATVGINAPNFMAKNIGFENTAGAEKHQAVALRVTADKAVFYNCAMNGYQDTLYTQSQRQFYRECSISGTIDFVFGDAIAVFQKCKLVVRKPMETQQCMVTAGGRSKVDSPSALVFQSCSFTGEADVMGLSPKIAYLGRPWRAYSKVVIMDSEIADIFVPEGYMPWMGSAFKETSTYYEFNNKGPGAVTVGRITWPGFKVINALEAADYYPGRFFEIANSTSRDSWILHSGVPYSLGPLN 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02752 566 PANTHER PECTINESTERASE 8 564 - -
Cca11g02752 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 207 IPR035513 -
Cca11g02752 566 CDD PMEI-like_3 57 208 - -
Cca11g02752 566 SMART PMEI_2 50 202 IPR006501 GO:0004857
Cca11g02752 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 206 IPR035513 -
Cca11g02752 566 Pfam Pectinesterase 249 540 IPR000070 GO:0030599|GO:0042545
Cca11g02752 566 ProSitePatterns Pectinesterase signature 1. 274 293 IPR018040 -
Cca11g02752 566 SUPERFAMILY Pectin lyase-like 247 562 IPR011050 -
Cca11g02752 566 Gene3D - 243 563 IPR012334 -
Cca11g02752 566 TIGRFAM PME_inhib: pectinesterase inhibitor domain 50 205 IPR006501 GO:0004857
Cca11g02752 566 PANTHER PECTINESTERASE 8 564 - -
Cca11g02752 566 Pfam Plant invertase/pectin methylesterase inhibitor 55 202 IPR006501 GO:0004857
Cca11g02752 566 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02752 Cca-Chr11 54891847 54894159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02752 1 565 Carbohydrate Esterase AT3G05610 45.026 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02752 K01051 - gmx:100820068 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02752 11 54891847 54894159 Cca11g02752 11 54891847 54894159 ECH
Cca11g02752 11 54891847 54894159 Cca08g01698 08 48761554 48764439 PCT