Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02747 ATGTGTGGTGGTGCCATCATTTCTGATTTCATAGACGTCAACTTGAAGACTGGTCGGAAATTCACCACCCACGACCTCTGCTCTGAGCTCGACACTTTCTCTCACTTCCTACCTTTCAACGCCAcctcctcctcttcttcttcttcttcccttcatcatcatcACTCTCAGGATCCAAACCCCACTCCTCTTCCAAATAACAAAGTGGAGAGATGCAAGGGTAAGGGGCGGAAGAAGGTGTACAGAGGAATAAGGCAGAGGGCATGGGGGAAGTGGGCTGCGGAGATAAGGGACCCACGTAAGGGTGTGAGAGTGTGGCTGGGGAGTGGGGACTTTCAGCACCGCCGTAGAAGCCGCTCGCGCTTACGACGCCGCCGCCAAGCGCATCCGCGGAGACAAGGCTAA 405 0.4988 MCGGAIISDFIDVNLKTGRKFTTHDLCSELDTFSHFLPFNATSSSSSSSSLHHHHSQDPNPTPLPNNKVERCKGKGRKKVYRGIRQRAWGKWAAEIRDPRKGVRVWLGSGDFQHRRRSRSRLRRRRQAHPRRQG 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02747 134 MobiDBLite consensus disorder prediction 41 64 - -
Cca11g02747 134 PANTHER DNA-BINDING DOMAIN 1 108 IPR044808 GO:0003700|GO:0009873
Cca11g02747 134 MobiDBLite consensus disorder prediction 109 134 - -
Cca11g02747 134 CDD AP2 81 114 IPR001471 GO:0003700|GO:0006355
Cca11g02747 134 ProSiteProfiles AP2/ERF domain profile. 80 109 IPR001471 GO:0003700|GO:0006355
Cca11g02747 134 SMART rav1_2 80 119 IPR001471 GO:0003700|GO:0006355
Cca11g02747 134 Gene3D AP2/ERF domain 79 117 IPR036955 GO:0003700|GO:0006355
Cca11g02747 134 SUPERFAMILY DNA-binding domain 80 109 IPR016177 GO:0003677
Cca11g02747 134 MobiDBLite consensus disorder prediction 116 134 - -
Cca11g02747 134 MobiDBLite consensus disorder prediction 41 79 - -
Cca11g02747 134 PANTHER EREBP TRANSCRIPTION FACTOR 1 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02747 Cca-Chr11 54853069 54854930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02747 1 109 AP2-EREBP Transcription Factor Family AT3G16770 49.558 1.25e-24 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02747 K09286 - gmx:100527415 129.028