Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02741 ATGGGGAGAATGGGACAAGAATCAGACTCCAAAGCCAAGTTAGTGTTAGAGATTTGCTCCATTTCCACGCGTTCCGTGGTGTGTGTTCATACACTTTTCTCAAGATCAGCCAATGCGATTTTTGTTGACTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGGTGAACGCCATTCGCAAACGCTACCACAAACTTGCCTTACAAGTTCACCCAGATAAGAATAAACACCCCAAGGCTGAAATTGCTTTCAAGCTCGTTTCTGAGGCATATGCATGTCTATCTAATGCAGAAAAGAGAGAAGCCTTTGACTCGGAGAGATGCAAGCATTTCTGCTTCGAGTGCAAAAGAATTCCGTATTCATCTAGAAATGTCCCTGGAAATTCAAGTGGGTCAGGTTTTAAGGCATGGAACATCATAACCAGATCAAGATCTTTCAAACTTTGGAGAAATATTAGGGACATGAGGGAAAGATTCATGGACGAGGCTAAGGTTATAGAAAACTGTTTGCGAACAAATTCAATGTCGAGGAAAGAATCCCCACACTACAACTCAGTTGGCTTTCTAAATAGAAGCAAGTCACTGCAAAGATTCGAGAAAGAAACCCCAGTTTTCAATCCATCGGACTACTTGTACCAAGGCTACCCTCACCTGAGGGGCTATAATTACAAGAATTCTTCGACATTTTGGTACTTGCAGAGAAATAGTATGCTTCACAATGGAAGGGGAGGAGCGCAGCATGCCTCTCCAGTTTTTGAGGTCAAATCGAGGAGTTTGTTTACTAGCAGATTCGCTTTTGTCCCATCAAAATGTTAG 816 0.4252 MGRMGQESDSKAKLVLEICSISTRSVVCVHTLFSRSANAIFVDWYCILGVEENAGVNAIRKRYHKLALQVHPDKNKHPKAEIAFKLVSEAYACLSNAEKREAFDSERCKHFCFECKRIPYSSRNVPGNSSGSGFKAWNIITRSRSFKLWRNIRDMRERFMDEAKVIENCLRTNSMSRKESPHYNSVGFLNRSKSLQRFEKETPVFNPSDYLYQGYPHLRGYNYKNSSTFWYLQRNSMLHNGRGGAQHASPVFEVKSRSLFTSRFAFVPSKC 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02741 271 Gene3D DnaJ domain 42 166 IPR036869 -
Cca11g02741 271 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 6 257 - -
Cca11g02741 271 SMART dnaj_3 42 99 IPR001623 -
Cca11g02741 271 ProSiteProfiles dnaJ domain profile. 43 107 IPR001623 -
Cca11g02741 271 SUPERFAMILY Chaperone J-domain 35 106 IPR036869 -
Cca11g02741 271 CDD DnaJ 43 96 IPR001623 -
Cca11g02741 271 ProSitePatterns Nt-dnaJ domain signature. 84 103 IPR018253 -
Cca11g02741 271 PANTHER BNAC03G44070D PROTEIN 6 257 - -
Cca11g02741 271 Pfam DnaJ domain 43 104 IPR001623 -
Cca11g02741 271 PRINTS DnaJ domain signature 45 63 IPR001623 -
Cca11g02741 271 PRINTS DnaJ domain signature 63 78 IPR001623 -
Cca11g02741 271 PRINTS DnaJ domain signature 79 99 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02741 Cca-Chr11 54792898 54794358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02741 43 106 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 39.706 7.09e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02741 - - gmx:100801809 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02741 11 54792898 54794358 Cca11g02741 11 54792898 54794358 ECH
Cca11g02741 11 54792898 54794358 Cca08g01717 08 49063229 49064520 PCT