Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02731 ATGAATCTCACTCTCACCAACGGAAAGGGATCCACGTCAACGGTTACTTCCGCCGCCGTTATGAAATCCTCCGACGCCGTCTCCGACCAGTTTCCGGCCGGTCTCCGGGTTCTGGTGGTCGACGATGATCCCACGTGCCTCATGATCCTCGAGAAGATGCTCCGCACGTGCCTCTACGAAGTTACGAAATGCAATCGAGCAGAAACTGCACTCTCACTTCTGAGGGAGAGCAAAAATGGGTTTGACATTGTTATAAGCGATGTGCATATGCCGGACATGGATGGATTCAAGCTTTTGGAGCTTATTGGGTTGGAGATGGACCTTCCTGTTATTATGATGTCTGCGGATGATGGCAAAAGTGTTGTTATGAAGGGTGTGACTCATGGTGCTTGTGATTACCTGATTAAGCCAGTTCGCATTGAGGCTTTGAAGAACATATGGCAGCATGTGGTGAGGAAGAGGAAGAATGAATGGAAAGACACTGAGCAATCCGGCAGTGCTGAAGAAGGAGATCGGCAACCCAAGGCTTCTGATGAAGCGGATTACTCTTCCTCCGCGAATGAAGGGAGTTGGAGAAACTCGAAGAAGAGAAGGGACGAGGAGGATGAGGCAGAAGAGAGGGATGACACATCCACGTTGAAGAAGCCGCGAGTGGTATGGTCTGTGGAGCTCCATCAACAGTTTGTGGCTGCTGTGGATCAACTGGGAATTGACAAGGCTGTTCCTAAGAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAACGTTGCCAGCCACCTGCAGAAATACCGTCTGTATCTTCGAAGGTTGAATGGAGTTTCTCAGCACCAGAATAACATGAACAACTCCTTTCTTGGCCCCCAAGAGGGAACATTTGGGACTATTTCTTCAATTAATGGGATTGATCTTCAAACTCTTGCAGTTGCTGGCCAGCTCCCAGCACAAAGTCTTGCAACACTTCAAGCAGCCGGACTAGGTAGGTCAACTGCAAAAGCTGGTGTTCCTATGCCTATCATGGACCAAAGAAACCTTTTCAGTTTTGAAAACCCAAGGTTAAGATTCGGAGAAGGCCAACAGCAACATTTAAGCAGTAGTAAACCAGTGAACTTATTGCATGGAATCCCTACCAACATGGAGCCAAAGCAGCTTGCCAATTTGCACCAGTCTTCCCAATCCCTTGGCGGCTTGAATATGCGAGTCAATGCTTCTGCTACACAAGGCAACCACTTATTGATGCAAATGGCACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAAATACTGGTCCTCGTGTTCCCAGACTTCCATCATCTTTGGGGCAGCCCACTGTATCAAATGGAATTTCTAATGGTCTTCTGGGCAGAAATGGGATTGCTGGTAATAACAGAGGACCTGCTTATAATCCTGTTCTGCCGAGCACTTCGTTGTTGAATTTTCCAATGAATCAAGCCTCTGAAATGTCTGTGAATAATAGTTTCCCTCTTGGAAGCACTCCAGGTATATCCAGCATCACAACAAAAGGCTCATTTCAAGACGAAGTTACATCAGGAATTAAAGGATCTGGTGGATTTCCAAGTTATGATATTTTTAATGAACTGCACCATCACAAGTCTCATCATGATTGGGATATAACAAACCCAGGCCTGACATACAATGCCTCCCAGCATGCAAATCCTTTACAAGGTAACATTGATGTCTCACCATCAGTTTTAGTGCATCAAGGCTTTTCTTCTACACAACAGACTGGCCAAAGCAGAGACTCCGCTTTGATCGGAAAAGCTATGTTCTCCATGGGAGAAGGCTTGCAACAAGATAACCTCCAAAATGCTGGTCAACACCTCAATCCGCTTCTTGTCGACAATTCAATAAGGGTCAAGGCTGAAAGAATTCCTGATGCAAGCTCCCAGACTAACCTCTTCCCTGAGCATTACGGACAAGAGGATCTGATGAGTGCACTTCTAAAACAGGAAGGCATGGGACCAGCCGAGAATGAGTTTGAATTTGATGGATATTCACTGGACAACATTCCTGTCTAG 2046 0.4624 MNLTLTNGKGSTSTVTSAAVMKSSDAVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRESKNGFDIVISDVHMPDMDGFKLLELIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDTEQSGSAEEGDRQPKASDEADYSSSANEGSWRNSKKRRDEEDEAEERDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLNGVSQHQNNMNNSFLGPQEGTFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKAGVPMPIMDQRNLFSFENPRLRFGEGQQQHLSSSKPVNLLHGIPTNMEPKQLANLHQSSQSLGGLNMRVNASATQGNHLLMQMAQSQPRGQMLSENTGPRVPRLPSSLGQPTVSNGISNGLLGRNGIAGNNRGPAYNPVLPSTSLLNFPMNQASEMSVNNSFPLGSTPGISSITTKGSFQDEVTSGIKGSGGFPSYDIFNELHHHKSHHDWDITNPGLTYNASQHANPLQGNIDVSPSVLVHQGFSSTQQTGQSRDSALIGKAMFSMGEGLQQDNLQNAGQHLNPLLVDNSIRVKAERIPDASSQTNLFPEHYGQEDLMSALLKQEGMGPAENEFEFDGYSLDNIPV 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02731 681 SMART REC_2 35 147 IPR001789 GO:0000160
Cca11g02731 681 Gene3D - 35 171 - -
Cca11g02731 681 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 654 IPR045279 GO:0009736
Cca11g02731 681 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 271 IPR017930 -
Cca11g02731 681 PIRSF RR_ARR_type-B 16 673 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cca11g02731 681 Gene3D - 212 274 - -
Cca11g02731 681 SUPERFAMILY Homeodomain-like 212 272 IPR009057 -
Cca11g02731 681 ProSiteProfiles Response regulatory domain profile. 36 151 IPR001789 GO:0000160
Cca11g02731 681 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 215 268 IPR006447 GO:0003677
Cca11g02731 681 CDD REC_typeB_ARR-like 37 151 - -
Cca11g02731 681 MobiDBLite consensus disorder prediction 191 212 - -
Cca11g02731 681 Pfam Response regulator receiver domain 37 145 IPR001789 GO:0000160
Cca11g02731 681 MobiDBLite consensus disorder prediction 157 212 - -
Cca11g02731 681 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 654 - -
Cca11g02731 681 SUPERFAMILY CheY-like 34 158 IPR011006 -
Cca11g02731 681 MobiDBLite consensus disorder prediction 157 178 - -
Cca11g02731 681 Pfam Myb-like DNA-binding domain 217 267 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02731 Cca-Chr11 54678300 54682721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02731 70 681 Response Regulator Gene Family AT3G16857 49.770 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Cca11g02731 Response_reg 1.4e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02731 - K14491 gmx:100814930 1236.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02731 11 54678300 54682721 Cca11g02731 11 54678300 54682721 ECH
Cca11g02731 11 54678300 54682721 Cca08g01730 08 49228922 49233138 PCT