Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02730 ATGCTCCTCCGAACCCACAGCTGCCACGTCAGCAGCATCTTCGCCGCGTTAGCCATCTTCCTCGCAACGGCGACGTTCGCCGCCGCGCAATCTTGCAACGGCATCCAGCTCTCCTACGCTTACACCGGCGGCGAGCGCCTCCCTCCCAACGTCTCCGACGCGGCGAAGCAGCCCTACCGGTTCCAGTCGACGGTGACGGTGCTCAACAACGGCCTCGACGAGCTCAAGTCCTGGAAGGTCTTCGTGGGGTTCGATCACGACGAGTTTTTGGTCTCCGCCTCCAATGCGGTGCTCGCCGATGGCACCACCCTCCCCGCCGCCGTCGGAAACGGCACCGTCTTCGCTGGCTACCCCATGACCGATCTCAAGACCGCCGTCGAAACCGCCGGCGACTTGACCCAGATGCAGGCTCAGATCAACCTCGTCGGCACCGTCTTCGGGGTGGCGCCGCCCAATGTTCCCATGCCGGCGTCCATCAACCTCGCTAACGATGGATTCATCTGTCGGAAATCCTCCACTCAAGGGAAGAATGCGAGTAGTGTGTGTTGCACGAGAGATCCCAAGTTCAAAACTAACATAACCACGGATGAAAAGTTTCTGCCACGTCAGAGTGGTGATCTGACAATCATGTATGATGTGATCAGAACTTATGATTCCAATTACTGGGCTGAGGTTACTATCGCAAACCATAACTCCCTTGGGAGGCTTGACAACTGGAGGTTGAGCTGGGACTGGATGAATGATGAGTTCATTTATTCTATGAAAGGTGCTTATCCTTCTGTTGTGGATGCTTCTGATTGTCTTTTTGGGAAGCAAGGTACATTCTACAAGGAACTTGACTTTGCCAATGTGTTGAATTGTGAGAGAAGGCCCACCATAATTGATCTCCCTCCCACCAAGTTCAATGATTCTGAGCTTGGGAAGATTCCCTTTTGCTGCCGGAATGGTACTATTTTGCCTCCATCCATGGATCCTAGCATGTCAGCTTCCAGATTCCAAATGCAGGTCTTCAAGATGCCGCCGGCGCTTAACCGCTCCCAGCTTTCTCCGCCGCAGAACTGGAAGATAAGTGGTTCACTCAACCCTGACTACAAATGTGGCCCTCCTGTGCGAGTGAGTCCTACTGAAAATCCTGATACATCCGGCTTACCATTGAACAAAACCGTGATCGCCAGTTGGCAGGTTGTATGCAACATAACAGTGGCCAAGGGAACATCAAGCAAATGCTGTGTCTCGTTTTCAGCTTACTACAATGATTCAGTTATTCCATGCAAGACATGTGCTTGTGGATGCTCCAAGAACACACAGAGGACATGTAGCACTACTGCTCCAGCTATGTGGCTTCCACCGGAGGCACTTCTTGTTCCTTTTGAGAACCGAACTGCCAAGGCGGTTGCTTGGGCGAGTCTGAAACACCTCCGGGTGCCAAACCCTATGCCTTGTAGCGATAACTGTGGTGTGAGCATCAACTGGCATTTGTTCACTGACTACAACAAAGGATGGAGTGCAAGGGTCACACTTTTCAACTGGGGTGAGACTAATTTTGCAGACTGGTTTGCTGCGGTTCAAATGGACAAAGCAGCTGCAGGTTTTGAGAAAATGTATTCATTCAATGCAACTGCTCTAGATGGTGTCAACAACACAATAATCATGCAAGGTTTGCCAGGATTGAACTACCTTGTAGCAGAAACAGATGGAGCTGACCCTCTGAAAGATCCTAGGGTGCCTGGTAAACAACAATCAGTGATCTCATTCACCAAGAAAACCACTCCTGGAATCAATGTGGCTCGTGGAGATGGGTTTCCCACTAAAGTCTATTTCAATGGGGAGGAATGTTCTCTTCCTTCAATCTATCCAACAAGCAGTGGTTTCAGGAATGGTTTTTCCTTGGCCACTTCCTTGCTTCTACCACTGTTGCTGATCCTCTTGACGCTGTAA 1938 0.5083 MLLRTHSCHVSSIFAALAIFLATATFAAAQSCNGIQLSYAYTGGERLPPNVSDAAKQPYRFQSTVTVLNNGLDELKSWKVFVGFDHDEFLVSASNAVLADGTTLPAAVGNGTVFAGYPMTDLKTAVETAGDLTQMQAQINLVGTVFGVAPPNVPMPASINLANDGFICRKSSTQGKNASSVCCTRDPKFKTNITTDEKFLPRQSGDLTIMYDVIRTYDSNYWAEVTIANHNSLGRLDNWRLSWDWMNDEFIYSMKGAYPSVVDASDCLFGKQGTFYKELDFANVLNCERRPTIIDLPPTKFNDSELGKIPFCCRNGTILPPSMDPSMSASRFQMQVFKMPPALNRSQLSPPQNWKISGSLNPDYKCGPPVRVSPTENPDTSGLPLNKTVIASWQVVCNITVAKGTSSKCCVSFSAYYNDSVIPCKTCACGCSKNTQRTCSTTAPAMWLPPEALLVPFENRTAKAVAWASLKHLRVPNPMPCSDNCGVSINWHLFTDYNKGWSARVTLFNWGETNFADWFAAVQMDKAAAGFEKMYSFNATALDGVNNTIIMQGLPGLNYLVAETDGADPLKDPRVPGKQQSVISFTKKTTPGINVARGDGFPTKVYFNGEECSLPSIYPTSSGFRNGFSLATSLLLPLLLILLTL 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02730 645 PANTHER COBRA-LIKE PROTEIN 7 11 643 - -
Cca11g02730 645 Pfam COBRA-like protein 221 400 IPR006918 GO:0010215|GO:0031225
Cca11g02730 645 PANTHER COBRA-LIKE PROTEIN 7 11 643 - -
Cca11g02730 645 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02730 Cca-Chr11 54671060 54673789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02730 32 630 COBRA Gene Family AT4G16120 68.657 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02730 - - gmx:100814396 1196.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02730 11 54671060 54673789 Cca11g02730 11 54671060 54673789 ECH
Cca11g02730 11 54671060 54673789 Cca08g01731 08 49233356 49236317 PCT