Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02727 atgctctctcATTCCTCCACATCCAATCGAATCGAATCTCAGATCTCGGAGATCAGAATGGTGGATCCAACTGGAAAAGGATCGGAAGGCGAGGAATCAAACCCTAACGCGGGGAACAGCAACAATGAGCACAAGAAAACATGCGCCGATTGCGGCACCACCAAGACCCCTCTCTGGAGAGGTGGTCCAGCGGGTCCTAAGTCTCTTTGCAACGCCTGCGGGATCAGAAGCCGCAAGAAGAAGAGAGCCATCTTGGGGATCAGCAAGGGGACCACCGAGGATCTCAGAAAGGGCAAGAGGAACAACGCCGCCGCCTTCAAGAGGGACGTTTTCTTGCACCGATCGCATTGGAAGAAGCTCGGCGAGGAAGAGAGAGCGGCCGTCTTGTTGATGTCGCTCTCCTATGGATCCGTTTATGCCTGA 423 0.5319 MLSHSSTSNRIESQISEIRMVDPTGKGSEGEESNPNAGNSNNEHKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGTTEDLRKGKRNNAAAFKRDVFLHRSHWKKLGEEERAAVLLMSLSYGSVYA 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02727 140 MobiDBLite consensus disorder prediction 29 47 - -
Cca11g02727 140 PANTHER OS01G0976800 PROTEIN 21 140 - -
Cca11g02727 140 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 41 82 - -
Cca11g02727 140 CDD ZnF_GATA 47 82 IPR000679 GO:0006355|GO:0043565
Cca11g02727 140 MobiDBLite consensus disorder prediction 1 15 - -
Cca11g02727 140 SMART GATA_3 42 93 IPR000679 GO:0006355|GO:0043565
Cca11g02727 140 Pfam GATA zinc finger 48 82 IPR000679 GO:0006355|GO:0043565
Cca11g02727 140 Gene3D - 42 109 IPR013088 GO:0006355|GO:0008270
Cca11g02727 140 MobiDBLite consensus disorder prediction 1 50 - -
Cca11g02727 140 ProSitePatterns GATA-type zinc finger domain. 48 73 IPR000679 GO:0006355|GO:0043565
Cca11g02727 140 ProSiteProfiles GATA-type zinc finger domain profile. 42 78 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02727 Cca-Chr11 54649399 54650274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02727 1 140 C2C2-Gata Transcription Factor Family AT5G49300 46.795 3.58e-36 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca11g02727 GATA 6.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02727 - - pvu:PHAVU_003G110400g 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02727 11 54649399 54650274 Cca11g02727 11 54649399 54650274 ECH