Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02726 ATGTCGCTCAGGCCAAATGCCAGAACCGAGGTTCGCCGCAACCGTTACAAGGTCGCCGTCGACGCCGACGAGGGCCGCCGTAGGCGAGAGGACAATATGGTCGAGATCCGCAAGAGCAAGCGCGAAGAGAGTTTGCTTAAGAAGCGTCGCGAAGGCCTCCAACAGTTCCCCGCTCCTCTTCAGAATTCCACCGTCGACAAGAAGTTAGAGAGTCTTCCTGCCATGGTTACTGGAGTTTGGTCGGATGATAATAGTCTGCAACTCGAGGCCACAACGCAATTTCGAAAGCTGCTTTCCATTGAGCGGAGTCCTCCGATTGAGGAAGTTATTCAAGCAGGCGTTGTTCCACGTTTTGTTGAGTTTCTTGTTAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCAGCATGGGCTCTCACAAATATTGCATCTGGGACTTCTGAGAACACTAAGGTGGTCATTGATCATGGGGCAGTTCCTATATTTGTCAAGTTACTTAGTTCTCCTAGTGATGATGTTCGGGAGCAGGCAGTGTGGGCTTTGGGAAATGTTGCTGGCGATTCTCCTAGGTGTAGAGATCTAGTGCTCAGCAATGGTGCTCTCATCCCACTATTAGCCCAGTTGAATGAGCATGCAAAACTCTCAATGCTGAGAAATGCCACGTGGACATTATCTAACTTCTGTAGGGGTAAGCCACAACCTCCATTTGAGCAGGTGAGACCAGCACTTCCGGCTCTTGAGCGTTTGGTTTTTTCCAACGATGAAGAAGTTTTGACAGATGCTTGTTGGGCACTATCATATCTCTCTGATGGTACAAATGACAAAATCCAAGCAGTTATTGAGGCAGGCGTATGCGGCAGATTGGTGCAGCTCCTCATGCACCCATCTCCCTCAGTGCTGATTCCGGCTCTTCGTACAGTGGGAAATATTGTGACTGGAGATGACATGCAGACTCAGAGTATTATCAACCATGGTGCACTCCCTTGCCTTTTGAACCTGTTGACACATAATCACAAAAAAAGCATCAAGAAAGAAGCTTGCTGGACTATATCAAACATTACTGCTGGAAATAAGGAACAAATACAGGCTGTTATTGAAGCAGCTCTGATTGCCCCCCTTGTCAATCTTCTTCAAAATGCCGAGTTTGACATTAAAAAAGAAGCTGCTTGGGCAATCTCAAATGCTACATCGGGTGGAACACATGATCAGATCAAGTACTTGGTGAGCCAGGGTTGCATAAAGCCTCTCTGTGATCTGCTTGTTTGCCCGGACCCAAGGATTGTCACTGTCTGTTTAGAAGGTCTAGAGAATATTCTCAAGGTTGGAGAAGCTGAGAAGAGCCTAGGTAATACTGGAGATGCCAACTTGTATGCACAGATGATAGATGATGCCGAGGGATTGGAGAAGATTGAAAACCTGCAGAGTCATGACAACAACGAAATATACGAAAAGGCTGTTAAAATTCTTGAAACATACTGGTTGGAAGATGAGGATGAGACATTACCTTCAGGAGATGGTGCTCAAGCTGGTTTCAATTTTGGAAGCAATGAGCTTCCAGTCCCATCTGGTGGATTCAACTTTAGTTGA 1584 0.4665 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQQFPAPLQNSTVDKKLESLPAMVTGVWSDDNSLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSNGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLMHPSPSVLIPALRTVGNIVTGDDMQTQSIINHGALPCLLNLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAALIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHDQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDANLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPSGDGAQAGFNFGSNELPVPSGGFNFS 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02726 527 Pfam Armadillo/beta-catenin-like repeat 314 354 IPR000225 GO:0005515
Cca11g02726 527 Pfam Armadillo/beta-catenin-like repeat 241 268 IPR000225 GO:0005515
Cca11g02726 527 Pfam Armadillo/beta-catenin-like repeat 272 310 IPR000225 GO:0005515
Cca11g02726 527 Pfam Armadillo/beta-catenin-like repeat 187 228 IPR000225 GO:0005515
Cca11g02726 527 Pfam Armadillo/beta-catenin-like repeat 400 437 IPR000225 GO:0005515
Cca11g02726 527 Pfam Armadillo/beta-catenin-like repeat 103 143 IPR000225 GO:0005515
Cca11g02726 527 Pfam Armadillo/beta-catenin-like repeat 145 184 IPR000225 GO:0005515
Cca11g02726 527 Pfam Armadillo/beta-catenin-like repeat 356 395 IPR000225 GO:0005515
Cca11g02726 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 156 198 IPR000225 GO:0005515
Cca11g02726 527 PIRSF Importin_alpha 2 526 IPR024931 GO:0005737|GO:0006606|GO:0061608
Cca11g02726 527 SMART arm_5 271 311 IPR000225 GO:0005515
Cca11g02726 527 SMART arm_5 102 143 IPR000225 GO:0005515
Cca11g02726 527 SMART arm_5 356 396 IPR000225 GO:0005515
Cca11g02726 527 SMART arm_5 230 269 IPR000225 GO:0005515
Cca11g02726 527 SMART arm_5 145 185 IPR000225 GO:0005515
Cca11g02726 527 SMART arm_5 186 228 IPR000225 GO:0005515
Cca11g02726 527 SMART arm_5 313 354 IPR000225 GO:0005515
Cca11g02726 527 SMART arm_5 399 439 IPR000225 GO:0005515
Cca11g02726 527 Gene3D - 11 50 IPR036975 GO:0006606
Cca11g02726 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 240 282 IPR000225 GO:0005515
Cca11g02726 527 PANTHER IMPORTIN SUBUNIT ALPHA 2 518 - -
Cca11g02726 527 Pfam Importin beta binding domain 12 92 IPR002652 GO:0006606|GO:0061608
Cca11g02726 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 324 367 IPR000225 GO:0005515
Cca11g02726 527 Pfam Atypical Arm repeat 454 498 IPR032413 -
Cca11g02726 527 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Cca11g02726 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 113 156 IPR000225 GO:0005515
Cca11g02726 527 PANTHER IMPORTIN ALPHA 2 518 - -
Cca11g02726 527 SUPERFAMILY ARM repeat 6 498 IPR016024 -
Cca11g02726 527 Gene3D - 70 493 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02726 Cca-Chr11 54638094 54642320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02726 128 388 U-box Gene Family AT3G46510 24.809 8.01e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02726 K15042 - gmx:100792804 1013.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02726 11 54638094 54642320 Cca11g02726 11 54638094 54642320 ECH
Cca11g02726 11 54638094 54642320 Cca02g01433 02 32874911 32882436 ECH
Cca11g02726 11 54638094 54642320 Cca03g02894 03 50254425 50259744 ECH