Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02724 ATGAAGCTATTTGGTTTCCCTCTCAAGGCTGAGGAAGTTATTGCAAATAGATCATTCCAGTGTCGATACTGTCGTCGCCAATTTCCGAATTCTCAAGCACTTGGAGGCCACCAAAACGCGCACAAGAGAGAACGTGCTAAGCTAGCTCAGTTCAAATACCTTCGCCGTCTTCGACAACACCATGATAGGTTCAAAAATGAACCAAAAGATCTACTTAAACCTACCCTTGTTGTTGCTAGTGCAACATCTAGTACTCATGCTGCTCAACCTTTCTTTCAATTTCATGGTGCAGGTGGGGATCATGTGGATCTCAACCTCACCCTAGCTTGCTCCTCTAATAATTTCAACAATTGA 354 0.435 MKLFGFPLKAEEVIANRSFQCRYCRRQFPNSQALGGHQNAHKRERAKLAQFKYLRRLRQHHDRFKNEPKDLLKPTLVVASATSSTHAAQPFFQFHGAGGDHVDLNLTLACSSNNFNN 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02724 117 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Cca11g02724 117 PANTHER ZINC FINGER PROTEIN 5 1 89 IPR044299 GO:0010090
Cca11g02724 117 PANTHER ZINC FINGER PROTEIN 6-LIKE 1 89 - -
Cca11g02724 117 Gene3D Classic Zinc Finger 7 89 - -
Cca11g02724 117 SUPERFAMILY beta-beta-alpha zinc fingers 16 46 IPR036236 -
Cca11g02724 117 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02724 Cca-Chr11 54614961 54615573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02724 17 63 C2H2 Transcription Factor Family AT1G24625 57.447 1.32e-12 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca11g02724 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02724 - - gmx:102670392 124.405