Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02717 ATGGCGAATAACTTAGCGCAACTGGTGGGTTCAGAAATACATGGATTCCACACATTGCAAGATTTGGATATGCAGAGCATTAAGGAGGAAGCAAGAACAAGATGGCTCCGTCCCAATGAGATTCATGCCATGCTTTGTAATTACAAGTATTTTACCATTAATGTCAAGCCAGTGAATTTGCCAAAAAGTGGTACTATTGTATTATTTGACCGCAAGATGCTTAGGAACTTCCGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGGAAAACAGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAACGAAGAAAGGATCCATGTATATTATGCACATGGCCAAGATAACCCAAATTTTGTCCGTAGGTGTTATTGGCTGCTTGATAAGAGTATGGAACACATAGTTCTTGTTCATTACCGTGAAACACAGGAGTTACAAGGTTCTCCTGTCACTCCTGTAAATTCACACTCCAGTTCTGTCTCTGATTCTATTGCACCATGGATTTTATCAGAAGAAATAGATTCAGGGACCACGACTACATATGCTGACGTGAGTGACAATATAAAGGTCAAAAGTCATGAACTCAGACTTCACGAGATTAATACACTTGAATGGGATGACCTAGTGGATGCCAATGATCATAACGCCTCTACTGAGCCTAATGGAGGCACGATTCCATATTTTGATCAACAAGATCAAATTTTACTGAATGGCAGTTTCAGCAATGTAGCCAGCAATCCATCTGCAGGAACTCCTTCTTTTGATAGTCTTACACAGCCAATTGCTGGGAGCAACAGTGTTCCTTACAATTTTGCAGAAAGTGTTAATCTTCAGACGATGGACAATCAAGCAAATCCAAATGAGCAGAGAAATCATACTGTTTCTATAGGTGGTGTTGATTCCTTGGACACTTTGGTCAATGATAGATTGCAAAGTCAGGGCAGCTTTGGAATGTGGGTGAACCACATCATGTCTGATTCACCATGTTCAGTAGATGACCCAACTCGTGAATCATCAGTTTCATCTGTTTATGAACCATATTCATCTCTGGTGGTGGATAGTCAACAATTTTCTCTGCCAGAACAAGTATTTACTATCACTGATGTATCCCCTACAAGTGTATCTTCCACTGAGAAATCAAAGGTTCTGGTGACTGGATTCTTTCATAAGGACTATATGCACCTTTCAAAGTCCAATCTGTTTTGTGTTTGTGGTGATGTTAGCGTTGCTGCAGAAATTGTTCAGGTTGGGGTCTACCGGTGCTGGGTATCACCGCATTCTCCAGGATTTGTGAATCTCTACTTGACCCTTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAATATCGCACTCCTGTTTTGCATGATCCTGCAGCTTCAATGGAAGAGAATGACAATTGGAATGAGTTTCGGCTACAAATGAGGCTTGCTTTTTTGCTCTTTGCTAAACAACCGAGCCTTGATGTTTTCTCTAGTAAAGTATCACCTAATAGGCTTAAGGAGGCAAGACAATTCGCCCTCAAAACATCATTTATTTCCAATAGTTGGCAATACTTAATCAAGTCAACTGAAGACAACCAAATTCCCTTTTCACATGCGAAAGATGCCCTATTTGAAATTGCATTGAAAAACAGACTAAGGGAATGGCTTTTGGAAAAAATTATTTTAGGCTGTAAGACTACAGAATATGATGCACATGGCCAAAGTGTAATCCATTTGTGTGCAGTTCTGGGATATACTTGGGCTGTTTCCTTATTTTCATGGTCAGGCTTGTCGCTGGATTTCCGTGATAGATTTGGATGGACAGCTCTTCATTGGGCAGCATATTATGGAAGGGAGAAAATGGTTGCAACTCTGTTGTCTGTTGGGGCAAAGCCAAATTTGGTCACTGATCCTACTCCACAAAATCCTGGTGGATGCACTGCTGCTGATCTTGCATATATGAGGGGTCATGATGGCTTGGCAGCTTATCTTTCAGAAAAATCTCTAGTTCAGCACTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGTTCGCTGGAAACTAGCACGGATGATCCAGTAAATTCTGCAAACCTTACCGAGGACCAGCAGAACCTGAAAGATACGCTAACTGCTTACCGAACCACTGCTGAGGCAGCAGCCCGCATACATGCTGCATTTAGGGAGCACTCTCTAAAACTGAGAACTAAGGTAGTTATGTCTTCCAATCCAGAGTCTGAAGCACGAGAAATAGTTGCAGCAATGAAGATTCAGCATGCCTTTAGGAACTACGAGACAAAGAAAATGATGGCAGCTGCAGCTCGCATTCAGCATACATTCCGCACGTGGAAGATTCGTAAAGATTTTCTCAACATGCGTCGTCAGGCTATTAAAATCCAATCTGCTTTTCGGTGCTTTCAAGAGCGGAAGCATTATCGCAAAATTCTTTGGTCTGTTAGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGTTTGAAGAGGAAGGGCTTCCGTGGGCTCCAGGTCAAAACTGTCGAAACAGGAACTGGGGATCAGGATCAACAAAGTGATGTAGAGGAGGAATTCTTTCGGACTGGTAGGAAACAAGCTGAAGAACGTGTCGAGAGATCTGTAGTGCGTGTGCAGGCTATGTTCCGTTCGAAGAAAGCACAAGAAGATTACAGGAGGATGAAATTGGCCCTTAACCAAGCAAAGCTGGAACGTGAATATGAACAACTTCTTAGTACTGAAGTTGACATGGAACTGAAGACATAG 2766 0.4197 MANNLAQLVGSEIHGFHTLQDLDMQSIKEEARTRWLRPNEIHAMLCNYKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSMEHIVLVHYRETQELQGSPVTPVNSHSSSVSDSIAPWILSEEIDSGTTTTYADVSDNIKVKSHELRLHEINTLEWDDLVDANDHNASTEPNGGTIPYFDQQDQILLNGSFSNVASNPSAGTPSFDSLTQPIAGSNSVPYNFAESVNLQTMDNQANPNEQRNHTVSIGGVDSLDTLVNDRLQSQGSFGMWVNHIMSDSPCSVDDPTRESSVSSVYEPYSSLVVDSQQFSLPEQVFTITDVSPTSVSSTEKSKVLVTGFFHKDYMHLSKSNLFCVCGDVSVAAEIVQVGVYRCWVSPHSPGFVNLYLTLDGHKPISQVVNFEYRTPVLHDPAASMEENDNWNEFRLQMRLAFLLFAKQPSLDVFSSKVSPNRLKEARQFALKTSFISNSWQYLIKSTEDNQIPFSHAKDALFEIALKNRLREWLLEKIILGCKTTEYDAHGQSVIHLCAVLGYTWAVSLFSWSGLSLDFRDRFGWTALHWAAYYGREKMVATLLSVGAKPNLVTDPTPQNPGGCTAADLAYMRGHDGLAAYLSEKSLVQHFNDMSLAGNISGSLETSTDDPVNSANLTEDQQNLKDTLTAYRTTAEAAARIHAAFREHSLKLRTKVVMSSNPESEAREIVAAMKIQHAFRNYETKKMMAAAARIQHTFRTWKIRKDFLNMRRQAIKIQSAFRCFQERKHYRKILWSVSVVEKAVLRWRLKRKGFRGLQVKTVETGTGDQDQQSDVEEEFFRTGRKQAEERVERSVVRVQAMFRSKKAQEDYRRMKLALNQAKLEREYEQLLSTEVDMELKT 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02717 921 SUPERFAMILY E set domains 367 454 IPR014756 -
Cca11g02717 921 SMART CG_1_2 27 145 IPR005559 GO:0003677
Cca11g02717 921 Coils Coil 884 913 - -
Cca11g02717 921 ProSiteProfiles IQ motif profile. 872 900 IPR000048 GO:0005515
Cca11g02717 921 Gene3D Immunoglobulins 362 457 IPR013783 -
Cca11g02717 921 Pfam Ankyrin repeats (3 copies) 551 632 IPR002110 GO:0005515
Cca11g02717 921 Gene3D - 529 673 IPR036770 -
Cca11g02717 921 ProSiteProfiles Ankyrin repeat profile. 603 635 IPR002110 GO:0005515
Cca11g02717 921 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 921 - -
Cca11g02717 921 Gene3D - 765 814 - -
Cca11g02717 921 ProSiteProfiles Ankyrin repeat region circular profile. 603 631 - -
Cca11g02717 921 SMART iq_5 766 788 IPR000048 GO:0005515
Cca11g02717 921 SMART iq_5 870 892 IPR000048 GO:0005515
Cca11g02717 921 SMART iq_5 789 811 IPR000048 GO:0005515
Cca11g02717 921 Pfam IQ calmodulin-binding motif 792 811 IPR000048 GO:0005515
Cca11g02717 921 SUPERFAMILY Ankyrin repeat 548 667 IPR036770 -
Cca11g02717 921 ProSiteProfiles IQ motif profile. 767 796 IPR000048 GO:0005515
Cca11g02717 921 ProSiteProfiles CG-1 DNA-binding domain profile. 24 150 IPR005559 GO:0003677
Cca11g02717 921 ProSiteProfiles IQ motif profile. 790 818 IPR000048 GO:0005515
Cca11g02717 921 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 14 921 - -
Cca11g02717 921 Pfam CG-1 domain 30 143 IPR005559 GO:0003677
Cca11g02717 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 738 818 IPR027417 -
Cca11g02717 921 SMART ANK_2a 603 632 IPR002110 GO:0005515
Cca11g02717 921 SMART ANK_2a 642 671 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02717 Cca-Chr11 54523940 54532367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02717 29 904 CAMTA Transcription Factor Family AT3G16940 55.239 0.0 952
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Cca11g02717 CG-1 1.8e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02717 K21596 - gmx:100793970 1643.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02717 11 54523940 54532367 Cca11g02717 11 54523940 54532367 ECH
Cca11g02717 11 54523940 54532367 Cca08g01741 08 49394795 49405996 PCT