Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02700 ATGGCGTTTTGGTGGCCATTGCTCGTTTTAGCATGCGCTTATGGAATCTGTAGGTTCCTTCTCATGCTTATTCCTCCAAAGGTTCCTTCCATCGACGTTGACACTTCCGACGTGTTGGACGATGGAAACCAAGCGCAGGAGAATAGCTTCATATACGTACCTCCGAGAGGAACATCGCAGCAATCAGGCGGCAAGATAGTTCAGTGCTATGAGCCTGCAACTATGAAATATTTAGGATATATTCCTGCATTGACGCCTGAAGAGGTCAAGGAACGAGTGGTAAAAGTAAGGAAAGCACAAAAAATGTGGGCAAAGTCTAGCTTCAAGCAAAGACGCTTGTTTTTGCGTATACTTTTGAAGTATATAATTAAACATCAAGCACTTATATGCGAAATATCTTCGCGTGATACTGGAAAGACTATGGTAGATGCCTCTTTAGGAGAAATAATGACTACATGTGAGAAGATCAATTGGCTACTGTCAGAGGGTGAGCAGTGGTTAAAGCCTGAATACCGGTCTTCTGGAAGATCAATGCTTCATAAGAGAGCCAAAGTAGAATTTCACCCCCTTGGTGTTATTGGAGCCATTGTTTCATGGAATTATCCTTTCCACAATATTTTTAATCCTATGCTGGCTGCAATTTTTTCTGGAAATGGTATTGTGATTAAGATTTCAGAGCATGCAAGTTGGTCTGGATGCTTTTACTTCCGGATCATCCAATCAGCCCTTGCTGCTATAGGAGCTCCAGAGGACCTTGTTGAGGTGATAACAGGGTTTGCTGAAACGGGTGAAGCATTAGTATCTTCTGTTGATAAAGTCATATTTGTCGGATCACCTGGTGTTGGTAAGATGATAATGAAAAATGCTGCTGACACACTTATACCAGTGACGCTGGAGCTTGGTGGGAAAGATGTATTTATTGTTTGTGAAGATGTAGATTTGGACCATGTTGCACAAATTGCTGTCAGGGCTGTTCTTCAGTCAAGTGGACAGAACTGTGCTGGAGCTGAGCGATTTTATGTCCACAGGGAAATTTATTCTTCTTTTGTCAGTAAAGTTACCAAAATCATCAAGTCTGTTACAGCTGGCCCACCACTTGTTGGAAAGTATGATATGGGAGCTTTATGCATGCATGAGCATTCTGAAAAGCTCCAAGGCCTTGTAAATGATGCTTTAGACAAAGGAGCTGAAATTGTTGCCCGTGGAAGTCTTGGACATATAGGTGAAGATGCAGTTGATCAATTTTTCCCCCCTACTGTGATTGTGAATGTGAATCACACAATGAGACTGATGCAAGAAGAGGCATTTGGACCAATCATGCCGATAATGAAATTCAGCTCCGATGAGGAGGTTGTCAGGCTTGCAAATGATTCAAAATATGGTCTCGGCTGTGCTGTATTTTCAGGCAGTCAGAGTCGTGCCAGAGAGATAGCTTCACAGATACATGTTGGGGTAGCTGCAGTTAATGATTTTGCAGCAACATACATGTGTCAGTCCCTGCCATTCGGGGGTGTAAAACATAGCGGATTTGGACGATTTGGTGGTATAGAAGGTTTGCGAGCTTGTTGTCTTGTTAAAGCAGTTGTTGAAGATCGATGGTGGCCATTTGTCAAAACAAAGATACCTAAGCCTATTCAGTATCCCGTTGCGGAGAATGGGTTCGAATTTCAGGAGTCACTTGTTGAAGCGCTTTATGGTCTCGGCATATGGGACCGGTTGCGAGCATTAGTAAACGTTTTAAAAATGCTTACTGAGCAGAATCCTagcggcagcagcagcagcaCTAAGAGAAGAATCGACTAA 1803 0.4221 MAFWWPLLVLACAYGICRFLLMLIPPKVPSIDVDTSDVLDDGNQAQENSFIYVPPRGTSQQSGGKIVQCYEPATMKYLGYIPALTPEEVKERVVKVRKAQKMWAKSSFKQRRLFLRILLKYIIKHQALICEISSRDTGKTMVDASLGEIMTTCEKINWLLSEGEQWLKPEYRSSGRSMLHKRAKVEFHPLGVIGAIVSWNYPFHNIFNPMLAAIFSGNGIVIKISEHASWSGCFYFRIIQSALAAIGAPEDLVEVITGFAETGEALVSSVDKVIFVGSPGVGKMIMKNAADTLIPVTLELGGKDVFIVCEDVDLDHVAQIAVRAVLQSSGQNCAGAERFYVHREIYSSFVSKVTKIIKSVTAGPPLVGKYDMGALCMHEHSEKLQGLVNDALDKGAEIVARGSLGHIGEDAVDQFFPPTVIVNVNHTMRLMQEEAFGPIMPIMKFSSDEEVVRLANDSKYGLGCAVFSGSQSRAREIASQIHVGVAAVNDFAATYMCQSLPFGGVKHSGFGRFGGIEGLRACCLVKAVVEDRWWPFVKTKIPKPIQYPVAENGFEFQESLVEALYGLGIWDRLRALVNVLKMLTEQNPSGSSSSTKRRID 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02700 600 Pfam Aldehyde dehydrogenase family 62 528 IPR015590 GO:0016491
Cca11g02700 600 CDD ALDH_F15-22 70 532 - -
Cca11g02700 600 PANTHER ALDEHYDE DEHYDROGENASE-LIKE PROTEIN YHR039C-RELATED 1 562 - -
Cca11g02700 600 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 1 562 - -
Cca11g02700 600 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 298 305 IPR029510 GO:0016491
Cca11g02700 600 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 306 501 IPR016163 GO:0016620
Cca11g02700 600 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 326 337 IPR016160 GO:0016491
Cca11g02700 600 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 67 526 IPR016162 GO:0016491
Cca11g02700 600 SUPERFAMILY ALDH-like 57 530 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02700 Cca-Chr11 54415873 54423690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02700 1 597 Aldehyde Dehydrogenase Gene Family AT3G66658 79.062 0.0 1019
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02700 - - gmx:100802990 1153.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02700 11 54415873 54423690 Cca11g02700 11 54415873 54423690 ECH