Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02698 ATGGTTGACACTTTCAGTATAGAGAGTAAGCTTCTTATAAGAGAGTTTGATGAAGATAAAGATGTTAAGGTGGTGGGGAAGCTTGAGAGAAACTGTGAGATTGGGACTAAAAAAGGGGTCTCCATTTTCACCAACATTGTGGGTGACCCTTTATCTAGGATTAGGTTCTATCCCCTTCATGTTATGTTGGTGGCTGAGCTGCTTGAAAGCAGGGAGCTTGTCGGTGTGGTTAGAGGGTGCATTAAGAGTATGAGAACTCCTTCTGAATCATTGCTGAAGATAGGTTGCATACTAGGCCTTAGGGTCTCTCCTACACACAGGAGAAAGGGGGTTGGACTAAAACTTGTCACCTCAGTTGAAGAATGGATGCTAAGAAATGGGGCTGAATACGCATGCCTAGCCACCGAAAAGAACAATGATGCCTCAAGAAACCTGTTTACCAACAAATGCAAATATGTGAGCCTCAGCTCACTTGTCATATTTCTCCATCCAATTAGTTTTCCTTCAAAGCATATTTCCAAGGACATAAAAATTGAGAAGGTAAACATGGACCAGGCAATTTCCTTATACAGAAGAACCCTGATGGCCAAAGAGTTGTATCCATTAGACATGGACGCTATTTTGAAGGAGAACCTCAGCTTGGGAACCTGGGTAAGTTATTACAAAGATGAAGGCTGGCTCAACTTGCAGGTAGAGAGTCATGAAGACCTAATCACCAATGAAATCACAAGCTCGTGGATCATCTTCAGCATATGGAACACTTGTGAAGCTTATAAGCTTCAACTTAAAAAGTCTCAGCCACTTAGGTTTCTTCACACAACTTTAAATCATGCAAGAGACAAAATTTTCCCTTGTCTGAGAATGTCGGTGAGTGACTCATTTTGTAGACCCTTTGGTTTTCTTTTTCTCTATGGGCTCCATGGGGAGGGAGAGAACCTTGGGGAGCTAATGGAATCCATATGGAGGTTCACATCAAGGTTGGGAGAAAGTTTGAGGGACTGCAGAGTGGTTATAACTGAGTTAGGGTTTGGGGATCCACTTGTAAACCATGTCCCTCAAACAGCTTCTATGTCGTGTATCGATGATATTTGGTTCACAAAAAGACTTTCAAGCAACAGTGACGAAAAGGATGATGAACTGCTGATGAAGAGACAAATCGGGAATGTCTTTGTTGACCCTAGGGATTTTTAG 1191 0.4223 MVDTFSIESKLLIREFDEDKDVKVVGKLERNCEIGTKKGVSIFTNIVGDPLSRIRFYPLHVMLVAELLESRELVGVVRGCIKSMRTPSESLLKIGCILGLRVSPTHRRKGVGLKLVTSVEEWMLRNGAEYACLATEKNNDASRNLFTNKCKYVSLSSLVIFLHPISFPSKHISKDIKIEKVNMDQAISLYRRTLMAKELYPLDMDAILKENLSLGTWVSYYKDEGWLNLQVESHEDLITNEITSSWIIFSIWNTCEAYKLQLKKSQPLRFLHTTLNHARDKIFPCLRMSVSDSFCRPFGFLFLYGLHGEGENLGELMESIWRFTSRLGESLRDCRVVITELGFGDPLVNHVPQTASMSCIDDIWFTKRLSSNSDEKDDELLMKRQIGNVFVDPRDF 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02698 396 CDD NAT_SF 62 133 - -
Cca11g02698 396 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 10 147 IPR016181 -
Cca11g02698 396 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 3 396 - -
Cca11g02698 396 Gene3D - 46 161 - -
Cca11g02698 396 PANTHER N-ACETYLTRANSFERASE HLS1-LIKE ISOFORM X1-RELATED 3 396 - -
Cca11g02698 396 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 11 232 IPR000182 GO:0016407
Cca11g02698 396 Pfam Acetyltransferase (GNAT) family 65 150 IPR000182 GO:0016407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02698 Cca-Chr11 54396342 54398263 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Cca11g02698 Acetyltransf_1 9.6e-13 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02698 - - gmx:100814448 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02698 11 54396342 54398263 Cca11g02698 11 54396342 54398263 ECH
Cca11g02698 11 54396342 54398263 Cca08g01762 08 49742143 49744244 PCT