Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02692 ATGGGAACACCACCAAGGGATGAACTGATGAAGAAGATCCAGGAGCTGGAGGAGGGGCACGCGCACTTGAAGCAAGAAATGTCGAAGCTCAAACTCTCCGATGCGAGGCACGGCCACCGCCAGAGGTCACACTCCGTGTCGCCGCAGCGTTCCAGGTTCGCCGCGCCGCCGAAGAGGCGGAGCGACGCGCCGCCGGCGTGGAAGAGAGGCGCGTGTTCGTTCAAGCAGTCGTCGCCGCTGCAGAGGGAGAGTCGCGGCGGCGATGCTCAATTTCACggcggaggaggaggaggagCTGCTCCGCGCTGTGGTCCTTCCGCTGTGAATTTCACGGAACGGCAGTATCTCAATATTTTGCAGTCAATGGGACAGTCTGTTCATATATTGGATCTTAATTGTCGCATAATATATTGGAACCGTAGTGCGGAAAATCTATATGGTTATACAGCAGAGGAAGCTTTAGGGAAGGATGGGATTGAGCTGCTTGTAGACCCTATAGATTTGGCCTTAGCCAATGATACAGTGAACCGTGTCATGATGGGAGAGAGCTGGACAGGGCAATTTCCGGTTAAGGATAAAACGGGAGAGAAGTTTTTAGCTGTAGCGACTAATACACCTTTCTATGATGATGATGGAAGCTTAGTTGGGATTATTTGTGTCTCTAGTGATTCACGGCCCTTTCTTGAAATGAAAGTTCCGATGTCTGGTGTAAGGAACACTGAGTCAGATTCAGATTCGGGTGGAACCCGACCTAGAAGTACCATGTCGAATAAACTTGGCATTGACACTCAACAGCCGCTTCAAGTTGCTCTCGCATCGAAAATTTCAAATTTGGCATCAAAGGTGAGTAACAAAGTTAAGTCAAGGATCTGGACGGGAGAAAATAATGTTGATCGCGAAGGTGGGAGCGGTGAAAGTCATCAATCTGAACATAGTTTATCGGAATCTGTTCTTTCGGACCAGAGAGAGGATGCTAATTCCAGTGGAGCTAGCACCCCCAGAGGTGATGTGCCACCATCCCATTTTGGTGTATTTTCTCATGTCGAAGAAAAATCTCAGGGAAAATCTCTGAGAGAGTCTGGTGATGAGAGTGAAGGAAAATCTATTCACAAAATCATACCTGCTAAGGCTGAAGCCTGGATTCAAAGGAAAACATTATCATGGCCATGGAGAACAAAGGATCGAGTAGGATCAGAGGCAACGGATGTTGGTGTTGCTGGGCCCTGGAATCAAGAAAATGACTCGGTTAATCAGAAAATTCTTTCTTCTAGCTTGAAGCAAGAAAGCCAGGCAGGTGAAAATAATCGCCCTAGTAACAACGAGGCTTCAGGGTCCTGGTCCTCCTCCTTTAATATTAACAGCACAAGTAGTGCCAGCAGCTGTGGGAGTGCTGGCAGTTGTGCTGTCAATAATAAAGTGGATGTGGACACTGATTCCTTGGATTACGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGACAAGGTTCTTGTGGAACTGTATATCATGCTCTGTGGTATGGATCAGATGTTGCTGTCAAAGTTTTCTCAAAGCAAGAATATTCAGATGATGTGATACTGTCCTTCAGACAAGAGGTGTCTGTCATGAAAAGACTTCGGCACCCAAATATTCTTCTCTTCATGGGGGCTGTGACTTCACCTCAACGTCTCTGCATTGTGACAGAGTTTCTCCCACGTGGAAGCTTGTGCCGCTTGTTACACAGAAACACATCAAAACTTGACTGGAGACGGCGAGTTCATATGGCCTTGGATATTGCACGAGGCGTAAATTATCTTCATCATTCTAACCCACCTATCATCCACAGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAGGAACTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGCACGAAACATATCTCACAACCAAGACAGGAAGGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACCCTCCGATGAGAAATCTGACGTTTACAGCTTTGGAGTAATATTATGGGAACTTGCAACTGAAAAGATACCTTGGGATAATCTCAACTCAATGCAGGTATTGCTTTCACGTGTTCATGAAGTCACGAACCTTTGA 2121 0.4597 MGTPPRDELMKKIQELEEGHAHLKQEMSKLKLSDARHGHRQRSHSVSPQRSRFAAPPKRRSDAPPAWKRGACSFKQSSPLQRESRGGDAQFHGGGGGGAAPRCGPSAVNFTERQYLNILQSMGQSVHILDLNCRIIYWNRSAENLYGYTAEEALGKDGIELLVDPIDLALANDTVNRVMMGESWTGQFPVKDKTGEKFLAVATNTPFYDDDGSLVGIICVSSDSRPFLEMKVPMSGVRNTESDSDSGGTRPRSTMSNKLGIDTQQPLQVALASKISNLASKVSNKVKSRIWTGENNVDREGGSGESHQSEHSLSESVLSDQREDANSSGASTPRGDVPPSHFGVFSHVEEKSQGKSLRESGDESEGKSIHKIIPAKAEAWIQRKTLSWPWRTKDRVGSEATDVGVAGPWNQENDSVNQKILSSSLKQESQAGENNRPSNNEASGSWSSSFNINSTSSASSCGSAGSCAVNNKVDVDTDSLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTSKLDWRRRVHMALDIARGVNYLHHSNPPIIHRDLKSSNLLVDRNWTVKVGDFGLSRLKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDNLNSMQVLLSRVHEVTNL 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02692 706 MobiDBLite consensus disorder prediction 307 334 - -
Cca11g02692 706 SMART serkin_6 489 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02692 706 Pfam PAS fold 114 221 IPR013767 GO:0006355
Cca11g02692 706 MobiDBLite consensus disorder prediction 237 261 - -
Cca11g02692 706 MobiDBLite consensus disorder prediction 423 449 - -
Cca11g02692 706 ProSiteProfiles Protein kinase domain profile. 489 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02692 706 MobiDBLite consensus disorder prediction 19 104 - -
Cca11g02692 706 MobiDBLite consensus disorder prediction 293 369 - -
Cca11g02692 706 CDD STKc_MAP3K-like 495 702 - -
Cca11g02692 706 MobiDBLite consensus disorder prediction 19 34 - -
Cca11g02692 706 Gene3D PAS domain 123 226 - -
Cca11g02692 706 MobiDBLite consensus disorder prediction 351 369 - -
Cca11g02692 706 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 27 696 - -
Cca11g02692 706 CDD PAS 122 223 IPR000014 -
Cca11g02692 706 TIGRFAM sensory_box: PAS domain S-box protein 112 223 IPR000014 -
Cca11g02692 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Cca11g02692 706 MobiDBLite consensus disorder prediction 232 261 - -
Cca11g02692 706 Pfam Protein tyrosine and serine/threonine kinase 489 696 IPR001245 GO:0004672|GO:0006468
Cca11g02692 706 ProSiteProfiles PAS repeat profile. 111 182 IPR000014 -
Cca11g02692 706 Gene3D Transferase(Phosphotransferase) domain 1 567 705 - -
Cca11g02692 706 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 27 696 - -
Cca11g02692 706 SUPERFAMILY PYP-like sensor domain (PAS domain) 117 220 IPR035965 -
Cca11g02692 706 Coils Coil 6 33 - -
Cca11g02692 706 SMART pas_2 113 180 IPR000014 -
Cca11g02692 706 Gene3D Phosphorylase Kinase; domain 1 482 566 - -
Cca11g02692 706 SUPERFAMILY Protein kinase-like (PK-like) 478 700 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02692 Cca-Chr11 54332622 54342307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02692 1 696 MAP Kinase Kinase Kinase AT3G06620 59.637 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Cca11g02692 PK_Tyr_Ser-Thr 7.8e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02692 - - pvu:PHAVU_003G114400g 1199.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02692 11 54332622 54342307 Cca11g02692 11 54332622 54342307 ECH
Cca11g02692 11 54332622 54342307 Cca08g01768 08 49827852 49841873 PCT